Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA   Type   Regulator
Locus tag   BSG8_RS20535 Genome accession   NZ_AP025224
Coordinates   3834433..3836616 (+) Length   727 a.a.
NCBI ID   WP_014481436.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain G8     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context


Location: 3829433..3841616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG8_RS20505 (BSG8_40690) - 3830755..3831006 (-) 252 WP_014481429.1 hypothetical protein -
  BSG8_RS20510 (BSG8_40710) yxbG 3831109..3831931 (+) 823 Protein_4048 SDR family oxidoreductase -
  BSG8_RS20515 (BSG8_40720) - 3832198..3832398 (+) 201 WP_033881094.1 helix-turn-helix transcriptional regulator -
  BSG8_RS20520 (BSG8_40730) - 3833021..3833239 (-) 219 WP_014481433.1 hypothetical protein -
  BSG8_RS20525 (BSG8_40740) - 3833284..3833505 (-) 222 WP_014481434.1 Blp family class II bacteriocin -
  BSG8_RS20530 (BSG8_40750) - 3834015..3834269 (+) 255 WP_014481435.1 hypothetical protein -
  BSG8_RS20535 (BSG8_40760) comA 3834433..3836616 (+) 2184 WP_014481436.1 peptide cleavage/export ABC transporter Regulator
  BSG8_RS20540 (BSG8_40770) - 3836617..3838086 (+) 1470 WP_014481437.1 HlyD family efflux transporter periplasmic adaptor subunit -
  BSG8_RS20545 - 3838410..3838526 (-) 117 Protein_4055 TetR/AcrR family transcriptional regulator -
  BSG8_RS20550 (BSG8_40780) qdoI 3838495..3839529 (-) 1035 WP_014481439.1 quercetin 2,3-dioxygenase -
  BSG8_RS20555 (BSG8_40790) yxaF 3839623..3840198 (-) 576 WP_014481440.1 transcriptional regulator YxaF -
  BSG8_RS20560 (BSG8_40800) yxnA 3840329..3841399 (+) 1071 WP_014481441.1 SDR family oxidoreductase -

Sequence


Protein


Download         Length: 727 a.a.        Molecular weight: 82047.88 Da        Isoelectric Point: 8.0611

>NTDB_id=77191 BSG8_RS20535 WP_014481436.1 3834433..3836616(+) (comA) [Bacillus subtilis subsp. natto strain G8]
MILKKYHCVKQMDDKDCGAACLATILKHYGSKISLAKIRNIAGTDTQGTNVLGVIKAAETLGFSAKGVKADQTAFEQPFP
LPAIAHVVLNGQLLHYMVIHKIKKDKIIIADPGKGIITYRKDEFFKIWTGILIFMVPSDTYQQQTDIRSVKKDILNLILH
QKSLIIHTALASFIITIFGILSTFYFQTIIDQILPNGLKNSLHIISIGLIIMYLFKVLLTAFRQYLMILLGQKLSISIML
GYFKHVLKLPMKFFSTRKDGEILARFNDTNKVIDAIVSASLSAVLDTFMLIMVGIFLYIQNTSLFIVTLALIPFYILTVW
VFMKPYESINDNEMENNAQLTSKIVETLSSIETIKAYNAEYIMSFETEKRFVKYLQSSFKHGVIDNLQSSIKLFLDLISG
ALILWIGAWQVIKGNMTIGQLITYNALLAYFLNPLQNIISLQSKLQSASVASKRLGEILDEEPEIQTSEARVTDPAYIQG
PIEINNVDFRYGTRRLILKDITLHIQKGEKVAFVGESGSGKSTLTKLLMKFYTAESGEILINGYHINDIHTNALRESISY
IPQESHFIQGSILENLLLGNSGSFTFEEIIEVCKQTNVHDFVNDLPMRYDTLVEENGSNLSGGQKQRLAIARALLRKPNI
LIMDESTSNLDTTTEQGISKMIYAQTVDVTTIIIAHRLSTIMNCDKIFVMENGEIIEYGNHNDLLKKKGKYYELWENQMP
SREMVTI

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=77191 BSG8_RS20535 WP_014481436.1 3834433..3836616(+) (comA) [Bacillus subtilis subsp. natto strain G8]
ATGATTTTAAAAAAATATCACTGTGTAAAACAAATGGATGATAAAGATTGCGGTGCTGCGTGTTTAGCAACGATTCTAAA
GCACTATGGATCAAAGATATCACTAGCGAAAATTCGAAATATTGCTGGCACAGATACACAAGGTACTAATGTTCTTGGTG
TAATAAAAGCAGCAGAGACCCTTGGGTTTTCTGCAAAAGGAGTTAAAGCTGATCAAACAGCTTTCGAACAACCGTTCCCT
CTTCCAGCTATTGCACATGTGGTTTTAAATGGTCAATTATTGCATTACATGGTCATACACAAAATTAAAAAAGATAAAAT
TATTATTGCTGATCCAGGAAAAGGTATAATCACCTATAGGAAAGATGAATTTTTTAAGATTTGGACCGGAATTTTAATTT
TTATGGTTCCAAGTGATACTTATCAGCAACAAACAGACATTAGAAGTGTTAAAAAAGACATTTTAAATTTAATACTTCAT
CAAAAATCTTTAATTATACATACAGCATTAGCATCTTTTATTATTACGATCTTCGGTATTCTGAGCACTTTTTATTTTCA
GACAATCATTGATCAAATTTTGCCCAACGGTTTGAAGAACTCTTTACATATTATTTCTATTGGACTTATAATAATGTACC
TATTTAAGGTTCTTTTAACAGCTTTTAGACAATATTTAATGATTCTATTAGGTCAAAAATTAAGTATATCCATTATGCTG
GGTTACTTTAAGCATGTTCTTAAGCTGCCTATGAAATTCTTTAGCACTAGAAAAGATGGTGAAATTTTAGCTAGATTCAA
TGATACAAATAAAGTTATTGATGCTATTGTCAGCGCATCCTTGTCCGCAGTGCTCGATACATTTATGTTAATCATGGTTG
GGATCTTTTTATATATTCAAAATACTTCTTTGTTTATAGTAACATTAGCTTTAATCCCCTTTTATATTCTAACTGTTTGG
GTTTTTATGAAGCCCTATGAGAGTATTAATGACAATGAAATGGAAAATAATGCTCAACTCACTTCAAAAATTGTTGAAAC
ATTAAGTAGTATAGAAACAATAAAAGCTTACAATGCTGAATATATTATGTCATTTGAAACTGAAAAGCGATTTGTGAAAT
ACTTGCAATCTTCTTTTAAACACGGTGTAATTGATAATCTTCAAAGTTCTATTAAGTTGTTTCTAGATTTAATAAGTGGT
GCATTGATACTATGGATCGGCGCTTGGCAAGTCATAAAGGGAAATATGACAATTGGCCAGTTGATTACATATAACGCACT
ATTGGCATATTTTTTGAACCCTTTACAAAATATCATCTCACTTCAATCCAAACTTCAGTCAGCTTCGGTTGCTTCAAAGA
GATTGGGAGAAATTTTAGATGAAGAACCTGAAATACAAACATCTGAAGCAAGGGTTACCGATCCAGCCTATATACAAGGC
CCTATTGAAATAAACAATGTTGATTTTCGATACGGAACTCGAAGGCTCATCTTAAAAGATATTACACTGCATATTCAAAA
AGGAGAGAAAGTTGCCTTTGTTGGAGAAAGCGGTTCAGGAAAATCTACTTTGACTAAGCTTTTAATGAAATTTTATACAG
CTGAATCAGGTGAGATTTTAATCAATGGTTATCATATAAATGATATTCACACCAATGCGTTAAGGGAAAGCATAAGTTAT
ATACCTCAAGAATCTCATTTTATACAAGGATCAATTCTTGAAAACCTTTTGCTTGGGAACTCAGGAAGTTTTACCTTCGA
AGAGATTATAGAAGTTTGCAAACAAACAAATGTACATGATTTTGTCAATGATTTACCAATGAGATACGATACTCTCGTAG
AGGAAAACGGGTCTAATTTATCTGGAGGCCAGAAGCAAAGACTTGCAATTGCCAGGGCATTATTAAGAAAACCTAACATT
CTTATAATGGATGAATCAACAAGCAACCTCGATACGACGACCGAACAGGGAATATCAAAGATGATTTACGCTCAGACTGT
CGATGTAACTACAATTATAATTGCTCATCGTTTAAGTACAATTATGAATTGCGACAAAATATTTGTCATGGAAAATGGAG
AAATCATAGAGTATGGGAACCACAATGATTTATTGAAGAAAAAAGGAAAGTACTATGAGTTGTGGGAGAACCAAATGCCA
TCGAGAGAGATGGTGACAATTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

41.98

98.624

0.414

  comA Streptococcus mitis NCTC 12261

41.98

98.624

0.414

  comA Streptococcus pneumoniae D39

41.562

98.624

0.41

  comA Streptococcus pneumoniae R6

41.562

98.624

0.41

  comA Streptococcus pneumoniae Rx1

41.562

98.624

0.41

  comA Streptococcus gordonii str. Challis substr. CH1

41.562

98.624

0.41

  comA Streptococcus pneumoniae TIGR4

41.423

98.624

0.409

  comA/nlmT Streptococcus mutans UA159

40.642

98.487

0.4