Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PCP76_RS01705 | Genome accession | NZ_CP115297 |
| Coordinates | 338948..339820 (-) | Length | 290 a.a. |
| NCBI ID | WP_033976386.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 135 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 333948..344820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP76_RS01660 (PCP76_01655) | - | 334809..334979 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| PCP76_RS01665 (PCP76_01660) | - | 335005..335454 (-) | 450 | WP_033970456.1 | MOSC domain-containing protein | - |
| PCP76_RS01670 (PCP76_01665) | - | 335451..336080 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PCP76_RS01675 (PCP76_01670) | - | 336213..336638 (+) | 426 | WP_033976385.1 | GNAT family N-acetyltransferase | - |
| PCP76_RS01680 (PCP76_01675) | - | 336635..337105 (+) | 471 | WP_073649710.1 | FAD/FMN-containing dehydrogenase | - |
| PCP76_RS01685 (PCP76_01680) | - | 337102..337791 (+) | 690 | WP_031805639.1 | energy-coupling factor ABC transporter permease | - |
| PCP76_RS01690 (PCP76_01685) | - | 337897..338106 (+) | 210 | WP_073649709.1 | hypothetical protein | - |
| PCP76_RS01695 (PCP76_01690) | yacG | 338143..338343 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PCP76_RS01700 (PCP76_01695) | coaE | 338340..338951 (-) | 612 | WP_033970460.1 | dephospho-CoA kinase | - |
| PCP76_RS01705 (PCP76_01700) | pilD | 338948..339820 (-) | 873 | WP_033976386.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP76_RS01710 (PCP76_01705) | pilC | 339824..341044 (-) | 1221 | WP_073649708.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| PCP76_RS01715 (PCP76_01710) | pilB | 341048..342748 (-) | 1701 | WP_033976388.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PCP76_RS01720 (PCP76_01715) | pilA | 342980..343435 (+) | 456 | WP_033976389.1 | pilin | Machinery gene |
| PCP76_RS01730 (PCP76_01725) | nadC | 343624..344472 (-) | 849 | WP_073649707.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31825.86 Da Isoelectric Point: 7.7068
>NTDB_id=771604 PCP76_RS01705 WP_033976386.1 338948..339820(-) (pilD) [Pseudomonas aeruginosa strain 135]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=771604 PCP76_RS01705 WP_033976386.1 338948..339820(-) (pilD) [Pseudomonas aeruginosa strain 135]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTGGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTGGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |