Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7K70_RS00945 Genome accession   NZ_AP022213
Coordinates   193089..194582 (-) Length   497 a.a.
NCBI ID   WP_182851431.1    Uniprot ID   A0A6S5RHT4
Organism   Metapseudomonas otitidis strain WP8-S17-CRE-03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 188089..199582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K70_RS00935 (WP8S17C03_01870) - 188989..190965 (+) 1977 WP_182851429.1 methyl-accepting chemotaxis protein -
  H7K70_RS00940 (WP8S17C03_01880) - 191006..192982 (-) 1977 WP_182851430.1 choline BCCT transporter BetT -
  H7K70_RS00945 (WP8S17C03_01890) comM 193089..194582 (-) 1494 WP_182851431.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7K70_RS00950 (WP8S17C03_01900) - 194620..194883 (-) 264 WP_044400771.1 accessory factor UbiK family protein -
  H7K70_RS00955 (WP8S17C03_01910) glnK 195294..195632 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  H7K70_RS00960 (WP8S17C03_01920) - 195667..196986 (+) 1320 WP_044400778.1 ammonium transporter -
  H7K70_RS00965 (WP8S17C03_01930) - 197104..197529 (+) 426 WP_044400781.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  H7K70_RS00970 (WP8S17C03_01940) sutA 197605..197925 (+) 321 WP_044400784.1 transcriptional regulator SutA -
  H7K70_RS00975 (WP8S17C03_01950) - 197983..198687 (-) 705 WP_182851432.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52694.50 Da        Isoelectric Point: 7.2571

>NTDB_id=77139 H7K70_RS00945 WP_182851431.1 193089..194582(-) (comM) [Metapseudomonas otitidis strain WP8-S17-CRE-03]
MSLALVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSALLTSGFEFPLRRITLSLAPADLPKEGGR
FDLAVALGILAASGQVPAAALEQLECLGELALSGALRPVQGVLPAALAARAAGRALVVPRENAEEASLASGLTVFAVGHL
LELAAHLNGQSPLAPFQSQGLPLQAAPYPDLADVQGQLAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLEE
HEALEVAAIHSVASQSPLACWPQRPFRQPHHSASGPALVGGGSRPKPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIIIARANDRVRFPARFQLVAAMNPCPCGYLGDDTHRCRCTPEQIQRYRARLSGPLLDRIDLHLTVAREATHLGAPVSG
GLDSATAAGEVGRARRRQLARQGCANAFLDLSRLHQHCPLTPDDQHWLEQACERLGLSLRAAHRLIKVARTLADLADEPD
IQRHHLAEALQYRPTSS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=77139 H7K70_RS00945 WP_182851431.1 193089..194582(-) (comM) [Metapseudomonas otitidis strain WP8-S17-CRE-03]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGGAAGCCCCCGCCGTCACAGTGGAGGCGCACCTGGCCAA
CGGCCTGCCGTCCCTGGCCCTGGTCGGCCTCCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGCGTCCGCAGCGCCCTGC
TCACCAGCGGTTTCGAATTCCCCCTGCGGCGCATCACCCTCAGCCTTGCACCAGCCGATCTTCCCAAGGAAGGCGGACGC
TTCGACCTGGCCGTCGCCCTCGGCATCCTCGCGGCCAGCGGCCAGGTGCCCGCCGCAGCCCTGGAGCAGTTGGAGTGCCT
CGGCGAGCTGGCGCTGTCCGGTGCCCTGCGTCCGGTGCAGGGCGTGTTGCCCGCTGCGCTGGCGGCTCGCGCTGCCGGAC
GGGCGCTGGTGGTGCCCCGGGAGAACGCCGAAGAGGCCAGCCTGGCCAGCGGCCTGACGGTGTTCGCCGTGGGTCACCTG
CTGGAGCTGGCCGCCCACCTCAACGGCCAGTCGCCGCTGGCACCCTTCCAGAGCCAGGGCCTGCCGCTGCAGGCCGCGCC
CTATCCCGATCTCGCTGACGTCCAGGGCCAACTGGCGGCCAAACGCGCGCTGCTGGTGGCAGCAGCCGGAGCCCACAACC
TGCTGCTGTCCGGCCCGCCCGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGCCTGCTGCCTCCGCTGGAGGAA
CACGAGGCCCTGGAAGTGGCCGCCATCCATTCGGTGGCCAGCCAATCGCCGCTGGCGTGCTGGCCCCAGCGTCCCTTCAG
GCAGCCTCACCACAGCGCGTCCGGCCCGGCCCTGGTGGGTGGGGGCAGTCGTCCGAAACCTGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTCCTCCGAGAGCCCCTGGAAAGC
GGCGAGATCATCATCGCCCGGGCCAATGACCGGGTACGTTTCCCGGCGCGCTTCCAGCTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACGACACCCATCGCTGCCGCTGCACACCGGAGCAGATCCAGCGCTACCGGGCCCGGCTCT
CCGGTCCGCTGCTGGACCGCATCGACCTGCACCTGACGGTCGCCCGCGAAGCCACACACCTGGGCGCGCCCGTCAGCGGC
GGGCTCGACAGTGCCACCGCTGCCGGGGAAGTCGGACGAGCCCGGCGTCGGCAACTGGCTCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGTCCCGGCTGCACCAGCACTGTCCGCTGACGCCCGACGACCAGCATTGGCTGGAGCAGGCCTGCGAGC
GCCTCGGGTTATCCCTGCGTGCCGCGCACCGGCTGATCAAGGTGGCCCGCACCCTCGCCGACCTGGCGGACGAGCCCGAC
ATCCAGCGCCACCACCTGGCGGAAGCCCTGCAGTACCGGCCGACCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S5RHT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.74

100

0.567
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Glaesserella parasuis strain SC1401

55.179

100

0.557
  comM Haemophilus influenzae Rd KW20

55.289

100

0.557
  comM Legionella pneumophila str. Paris

50

100

0.509
  comM Legionella pneumophila strain ERS1305867

50

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.463

Multiple sequence alignment