Detailed information NTG0769617

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QP018_RS06225
• Genome accession: NZ_CP126975
• Coordinates: 1286537..1287535 (-)
• Length: 332 a.a.
• NCBI ID: WP_285091708.1
• Uniprot ID: A0AAX3XFM0
• Organism: Gallibacterium anatis strain BJF12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1281537..1292535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP018_RS06215 (QP018_06215)	pglZ	1282025..1284361 (+)	2337	WP_285091714.1	BREX-1 system phosphatase PglZ type B	-
QP018_RS06220 (QP018_06220)	brxL	1284364..1286412 (+)	2049	WP_196767793.1	protease Lon-related BREX system protein BrxL	-
QP018_RS06225 (QP018_06225)	ruvB	1286537..1287535 (-)	999	WP_285091708.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QP018_RS06230 (QP018_06230)	ruvA	1287557..1288165 (-)	609	WP_039095556.1	Holliday junction branch migration protein RuvA	Machinery gene
QP018_RS06235 (QP018_06235)	-	1288385..1289272 (+)	888	WP_285091703.1	DMT family transporter	-
QP018_RS06240 (QP018_06240)	-	1289330..1289872 (+)	543	WP_285091701.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
QP018_RS06245 (QP018_06245)	-	1289883..1290725 (+)	843	WP_042907353.1	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	-
QP018_RS06250 (QP018_06250)	gorA	1290832..1292181 (+)	1350	WP_285091698.1	glutathione-disulfide reductase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37055.65 Da
• Isoelectric Point: 4.9439

>NTDB_id=769617 QP018_RS06225 WP_285091708.1 1286537..1287535(-) (ruvB) [Gallibacterium anatis strain BJF12]
MIEADRIISPTAKAEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIVVRSANCLNLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNGG
FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTPRGRIA
TLHTYQHFGVSK

Nucleotide

• Length: 999 bp

>NTDB_id=769617 QP018_RS06225 WP_285091708.1 1286537..1287535(-) (ruvB) [Gallibacterium anatis strain BJF12]
ATGATTGAAGCAGACCGTATTATCAGCCCTACAGCAAAAGCGGAAGAAGAATATATCGACCGCGCAATTCGTCCAAAATT
ATTGCAAGATTATGTTGGACAGCCACACGTTCGGGAACAGATGGATATTTTTATCAAAGCGGCAAAAATGCGTAATGATG
CACTTGATCATCTATTGATTTTTGGCCCTCCCGGTTTGGGAAAAACGACATTAGCCAATATTGTCGCCAATGAAATGGGG
GTGAATATTCGCACCACTTCCGGCCCAGTGTTAGAAAAAGCAGGCGATTTAGCAGCAATGTTGACTAATTTAGAACCTTA
TGATGTGCTGTTTATTGATGAGATTCATCGTTTATCACCGGCAATCGAGGAGGTGTTGTATCCGGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAGGGGCCGGCAGCACGGTCGATTAAATTGGATTTGCCGCCGTTTACGTTGGTTGGCGCA
ACGACGCGTGCCGGATCATTGACTTCGCCATTGCGAGATCGTTTTGGCATTGTGCAACGCTTGGAATTTTATTCGATTGA
AGATTTAACCTCCATTGTGGTGCGTAGCGCAAATTGCCTCAATCTTCAGATTGATGAGCAAGCGGCACACGAAATTGCAC
GCCGCTCACGCGGCACGCCACGGATTGTAAATCGATTATTACGTCGTGTTCGCGATTATGCCGATGTCAAAAATGGCGGC
TTTATTTCGGTAGAGATTGCGAAATTGGCATTAACGATGTTGGATATTGATTCAGAAGGCTTTGACTTTATGGATCGTAA
ATTGTTAATGGCGATTATTGAGCGTTTTGACGGCGGCCCGGTCGGTTTGGATAATTTAGCTGCGGCGATCGGTGAAGAGA
AAGAAACAATAGAAGATGTGTTGGAGCCTTATTTAATCCAGCAAGGTTTCTTACAACGTACACCGCGAGGAAGAATCGCC
ACACTGCATACGTATCAGCATTTTGGGGTGAGTAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

3D structure

• AlphaFold DB: A0AAX3XFM0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	62.654	97.59	0.611
ruvB	Streptococcus pneumoniae TIGR4	58.333	97.59	0.569
ruvB	Streptococcus pneumoniae R6	58.333	97.59	0.569
ruvB	Streptococcus pneumoniae D39	58.333	97.59	0.569
ruvB	Synechocystis sp. PCC 6803	52.266	99.699	0.521
ruvB	Helicobacter pylori 26695	55.082	91.867	0.506