Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QP018_RS06230 Genome accession   NZ_CP126975
Coordinates   1287557..1288165 (-) Length   202 a.a.
NCBI ID   WP_039095556.1    Uniprot ID   A0A921HCI8
Organism   Gallibacterium anatis strain BJF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1282557..1293165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS06220 (QP018_06220) brxL 1284364..1286412 (+) 2049 WP_196767793.1 protease Lon-related BREX system protein BrxL -
  QP018_RS06225 (QP018_06225) ruvB 1286537..1287535 (-) 999 WP_285091708.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QP018_RS06230 (QP018_06230) ruvA 1287557..1288165 (-) 609 WP_039095556.1 Holliday junction branch migration protein RuvA Machinery gene
  QP018_RS06235 (QP018_06235) - 1288385..1289272 (+) 888 WP_285091703.1 DMT family transporter -
  QP018_RS06240 (QP018_06240) - 1289330..1289872 (+) 543 WP_285091701.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QP018_RS06245 (QP018_06245) - 1289883..1290725 (+) 843 WP_042907353.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  QP018_RS06250 (QP018_06250) gorA 1290832..1292181 (+) 1350 WP_285091698.1 glutathione-disulfide reductase -
  QP018_RS06255 (QP018_06255) - 1292505..1292765 (+) 261 WP_285091695.1 hypothetical protein -
  QP018_RS06260 (QP018_06260) - 1292803..1293160 (-) 358 Protein_1213 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22686.36 Da        Isoelectric Point: 6.2429

>NTDB_id=769618 QP018_RS06230 WP_039095556.1 1287557..1288165(-) (ruvA) [Gallibacterium anatis strain BJF12]
MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEVAIYTHLVVREDAHLLFGFYHKQDRTLFRELIKTNG
VGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKTAERLIVELKGKFKAYQHDDFFIEQTTTQSGIETEKVSATD
DAISALVALGYKPAEAEKMVKRVAKPEWDSEQLIREALKSAL

Nucleotide


Download         Length: 609 bp        

>NTDB_id=769618 QP018_RS06230 WP_039095556.1 1287557..1288165(-) (ruvA) [Gallibacterium anatis strain BJF12]
ATGATTGGGCATTTACGCGGTATTTTATTGGAGAAATCGCCACCAGAAATTTTGTTGGAGGTTAACGGCATTGGTTATGA
AGTGTTATTGCCAATGACCAGTTTTTATCATTTGCCGGAAGTGAATATGGAAGTCGCCATTTATACGCATTTAGTGGTGC
GAGAAGATGCACATCTGCTATTCGGTTTCTATCATAAGCAGGATCGCACGTTATTTAGAGAATTAATCAAAACCAATGGT
GTCGGCCCTAAATTAGCGTTGGCTATTTTGTCAGCGATGTCGGTAAGCGAATTTTCTTATGCGATAGAACGTGAAGAGTT
GTCGAAGTTGGTGAAAATCCCCGGAGTGGGAAAGAAAACCGCCGAGCGTTTGATTGTTGAACTGAAAGGCAAATTTAAAG
CGTATCAGCACGATGATTTCTTTATTGAACAGACCACAACTCAAAGCGGCATTGAAACAGAGAAAGTTTCCGCAACGGAT
GACGCCATTTCTGCGTTGGTTGCATTGGGTTATAAACCGGCAGAAGCAGAAAAAATGGTGAAGCGTGTGGCAAAACCGGA
ATGGGATAGCGAACAGTTGATTCGTGAAGCTTTGAAGAGTGCCTTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(158-200)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A921HCI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.648

100

0.381
  ruvA Streptococcus pneumoniae R6

37.186

98.515

0.366
  ruvA Streptococcus pneumoniae D39

37.186

98.515

0.366
  ruvA Streptococcus pneumoniae TIGR4

37.186

98.515

0.366