Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   O8413_RS10005 Genome accession   NZ_CP115188
Coordinates   2156029..2156619 (-) Length   196 a.a.
NCBI ID   WP_158141364.1    Uniprot ID   -
Organism   Vibrio furnissii strain MT14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2151029..2161619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS09985 (O8413_09985) aroB 2151959..2153044 (-) 1086 WP_154180460.1 3-dehydroquinate synthase -
  O8413_RS09990 (O8413_09990) aroK 2153072..2153590 (-) 519 WP_004728569.1 shikimate kinase AroK -
  O8413_RS09995 (O8413_09995) pilQ 2153778..2155502 (-) 1725 WP_041942471.1 type IV pilus secretin PilQ family protein Machinery gene
  O8413_RS10000 (O8413_10000) pilP 2155527..2156039 (-) 513 WP_143680276.1 pilus assembly protein PilP Machinery gene
  O8413_RS10005 (O8413_10005) pilO 2156029..2156619 (-) 591 WP_158141364.1 type 4a pilus biogenesis protein PilO Machinery gene
  O8413_RS10010 (O8413_10010) pilN 2156612..2157202 (-) 591 WP_158165891.1 PilN domain-containing protein Machinery gene
  O8413_RS10015 (O8413_10015) pilM 2157192..2158196 (-) 1005 WP_283512490.1 type IV pilus assembly protein PilM Machinery gene
  O8413_RS10020 (O8413_10020) - 2158341..2160821 (+) 2481 WP_283512491.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22716.95 Da        Isoelectric Point: 5.0631

>NTDB_id=768809 O8413_RS10005 WP_158141364.1 2156029..2156619(-) (pilO) [Vibrio furnissii strain MT14]
MANVHDLELDEISEWPLVAQLVALVLLVLVLQGAGYWFYLQPKQDTLAAHKQQEQTLKSTIRIKASKVATLPKLKIQLDE
LAQRYDFLLRQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNQQFLYRLPLNIELTGNYHDIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=768809 O8413_RS10005 WP_158141364.1 2156029..2156619(-) (pilO) [Vibrio furnissii strain MT14]
ATGGCTAACGTACACGATCTGGAACTGGACGAAATCAGCGAATGGCCGTTGGTGGCTCAATTGGTTGCCTTGGTGCTGCT
GGTGTTGGTGTTGCAGGGCGCGGGGTACTGGTTTTATTTGCAGCCTAAACAAGACACATTGGCCGCACACAAGCAGCAAG
AGCAAACGCTGAAGTCGACGATTCGCATCAAAGCCAGCAAAGTCGCGACATTGCCGAAGCTCAAGATTCAGCTGGATGAA
CTGGCACAGCGGTACGACTTCCTGTTGCGTCAGCTGCCGGTGCAAAAAGAGCTCGCCAGCATGTTGGCGTCGGTGAACGA
GTTGGGGCTCGACAACAGTCTGACTTTTACTCGCATCGACTGGGGAGAAAAGCAGAATCAGCAATTTCTTTATCGGCTGC
CGCTCAATATCGAATTGACCGGTAATTATCACGACATCGGCGATTTTTCTGAAGCCATCGCGCGTCTACCACGCATCATT
AATTTTGACGACGTTGACTGGCAGCGCGTCAGCCAAGAGAGCAGCACGCTCCATTTCCGCGTTCGTGCCTATACCTATCA
GTTCAAACCGGAGGTCAGTGATGAACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

78.061

100

0.781
  pilO Vibrio campbellii strain DS40M4

70.526

96.939

0.684