Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   O8413_RS10010 Genome accession   NZ_CP115188
Coordinates   2156612..2157202 (-) Length   196 a.a.
NCBI ID   WP_158165891.1    Uniprot ID   -
Organism   Vibrio furnissii strain MT14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2151612..2162202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS09985 (O8413_09985) aroB 2151959..2153044 (-) 1086 WP_154180460.1 3-dehydroquinate synthase -
  O8413_RS09990 (O8413_09990) aroK 2153072..2153590 (-) 519 WP_004728569.1 shikimate kinase AroK -
  O8413_RS09995 (O8413_09995) pilQ 2153778..2155502 (-) 1725 WP_041942471.1 type IV pilus secretin PilQ family protein Machinery gene
  O8413_RS10000 (O8413_10000) pilP 2155527..2156039 (-) 513 WP_143680276.1 pilus assembly protein PilP Machinery gene
  O8413_RS10005 (O8413_10005) pilO 2156029..2156619 (-) 591 WP_158141364.1 type 4a pilus biogenesis protein PilO Machinery gene
  O8413_RS10010 (O8413_10010) pilN 2156612..2157202 (-) 591 WP_158165891.1 PilN domain-containing protein Machinery gene
  O8413_RS10015 (O8413_10015) pilM 2157192..2158196 (-) 1005 WP_283512490.1 type IV pilus assembly protein PilM Machinery gene
  O8413_RS10020 (O8413_10020) - 2158341..2160821 (+) 2481 WP_283512491.1 PBP1A family penicillin-binding protein -
  O8413_RS10025 (O8413_10025) oxyR 2160907..2161803 (-) 897 WP_014204332.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22001.14 Da        Isoelectric Point: 8.9883

>NTDB_id=768810 O8413_RS10010 WP_158165891.1 2156612..2157202(-) (pilN) [Vibrio furnissii strain MT14]
MVHDINLMPWREARREAHKRRFAGLCVLAVLAALGLQWGAGAYIDRQTQVQQQRLDFLNQHIRDLDSQIAALKVTEQEHK
ALLTRLSVVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGQEIELSGISDSTARLATMLDNLEKSDQLSEVGMHSIV
AGNRRFGKQFQSFKVSFLFHASSQQAVSADTGGAHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=768810 O8413_RS10010 WP_158165891.1 2156612..2157202(-) (pilN) [Vibrio furnissii strain MT14]
ATGGTGCATGACATCAATTTAATGCCGTGGCGAGAAGCGCGGCGCGAAGCCCATAAACGCCGTTTTGCCGGTTTGTGCGT
GCTGGCGGTGCTGGCCGCGTTGGGACTGCAATGGGGCGCAGGAGCGTATATCGACCGTCAAACACAAGTGCAGCAACAAC
GGCTGGATTTTCTCAACCAACACATTCGTGACTTAGACAGCCAAATTGCGGCGTTGAAGGTGACTGAGCAAGAGCATAAG
GCATTGTTGACCCGCTTGTCGGTGGTGGAGTCGTTGCAGCAGAAACGCAACAAGACCACTGAGTTCATGAACTTGATGCC
CCAACTGATCCCGGAAGGCGTCTACGTCGACAAAATCAAAATGAACGGTCAGGAAATTGAGCTGAGTGGCATCAGCGACA
GCACCGCGCGGCTGGCAACCATGCTCGATAATTTGGAGAAATCCGACCAACTGTCTGAGGTCGGTATGCATTCGATTGTG
GCGGGTAACCGTCGGTTTGGTAAGCAATTTCAGAGTTTTAAAGTGTCGTTCTTGTTCCACGCTTCATCGCAGCAAGCGGT
GAGTGCTGATACCGGAGGTGCCCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

69.543

100

0.699
  pilN Vibrio campbellii strain DS40M4

63.388

93.367

0.592