Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PCQ86_RS01340 Genome accession   NZ_CP115182
Coordinates   283107..284645 (-) Length   512 a.a.
NCBI ID   WP_123675325.1    Uniprot ID   -
Organism   Diaphorobacter sp. ED-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 278107..289645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCQ86_RS01320 - 278557..279336 (+) 780 WP_270174688.1 ABC transporter ATP-binding protein -
  PCQ86_RS01325 - 279367..280284 (-) 918 WP_196994608.1 LysR family transcriptional regulator -
  PCQ86_RS01330 - 280393..281202 (+) 810 WP_270174689.1 SDR family oxidoreductase -
  PCQ86_RS01335 - 281331..283061 (-) 1731 WP_270174690.1 methyl-accepting chemotaxis protein -
  PCQ86_RS01340 comM 283107..284645 (-) 1539 WP_123675325.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PCQ86_RS01345 - 284864..285595 (+) 732 WP_088887901.1 TorF family putative porin -
  PCQ86_RS01350 glnK 285616..285954 (+) 339 WP_011803632.1 P-II family nitrogen regulator -
  PCQ86_RS01355 amt 286001..287428 (+) 1428 WP_270174691.1 ammonium transporter -
  PCQ86_RS01360 - 287568..288518 (+) 951 WP_270174692.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53542.32 Da        Isoelectric Point: 7.7842

>NTDB_id=768671 PCQ86_RS01340 WP_123675325.1 283107..284645(-) (comM) [Diaphorobacter sp. ED-3]
MSLALVQSRALLGLHAPAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLDGWEFAGELSLSGLLRPVRGALATSLALRALAQPVRTVLPPGSAEEAALVPGTEIYRA
HHLLDVVRQFVPVPPPNDDGADDGGWQRLQPAPPAPATDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMGVEQALESAAIASLAGRFSPAQWMQRTTASPHHSCSAIALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSHQRACRCTPDQIARYQGKLSGPLLDRIDLHVEVP
ALPPEELLGAPPGEPSGAVRERVARAHERALQRQGKANQALQGQELEQMAALDTAAARFLQAAAARLAWSARSTHRALKV
ARTIADLSGCGTVGAAHVAEAVQYRRALRAPA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=768671 PCQ86_RS01340 WP_123675325.1 283107..284645(-) (comM) [Diaphorobacter sp. ED-3]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCACGCGCCCGCCGTTACGGTGGAAGTACACCTGGCCAA
CGGGTTGCCCAGCTTCGCGCTGGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCCGCGCTGC
AGAACGCCGGGCTGGAATTCCCGGCCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGATCTGCCCAAAGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCGAGCGGGCAGATCGACGCGGCCCGGTTGGACGGCTGGGAGTT
CGCCGGCGAGCTATCGCTGTCGGGCCTGCTGCGCCCGGTGCGCGGCGCCCTGGCGACCAGCTTGGCGCTGCGCGCGCTGG
CGCAGCCCGTACGCACGGTGCTTCCCCCCGGCAGCGCCGAAGAAGCTGCGCTGGTGCCGGGCACCGAGATCTACCGCGCG
CACCACCTGTTGGACGTGGTACGCCAGTTCGTGCCCGTGCCCCCGCCGAACGATGATGGCGCGGACGACGGCGGTTGGCA
GCGGCTGCAACCCGCGCCGCCGGCCCCGGCCACCGATGGCCCGGACCTGGCCGACGTGAAGGGGCAGGCCGCGGCCAAGC
GCGCACTGGAGATCGCTGCCGCAGGCGGGCACGGGCTGCTGCTCGTGGGGCCCCCGGGCTCGGGCAAATCCATGCTGGCC
CAGCGTTTTGCCGGGCTGCTGCCCCCGATGGGGGTGGAGCAAGCGCTGGAGAGCGCGGCCATTGCCAGCCTGGCCGGGCG
CTTCAGCCCCGCGCAGTGGATGCAGCGCACCACGGCCAGCCCGCACCACAGCTGCAGCGCGATCGCGCTGGTGGGCGGGG
GCTCGCCGCCGCGCCCGGGCGAGATCTCGCTCGCGCACGAAGGCGTGCTCTTCCTCGATGAATTCCCCGAATTCGCCCGC
AGCGCCCTGGAAGCGCTGCGCGAGCCGCTGGAAAGCGGGCGCATCACCATTGCCCGGGCGGCGCAGCGCGCCGAGTTCCC
GGCGCGCTTTCAGCTCGTGGCGGCCATGAACCCCTGCCCCTGTGGTTTTGCGGGCTCGCACCAGCGCGCCTGCCGCTGCA
CACCCGACCAGATCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCC
GCGCTGCCGCCCGAGGAACTGCTGGGCGCCCCGCCCGGCGAACCCAGCGGCGCCGTGCGCGAACGCGTGGCCCGCGCGCA
CGAACGAGCGCTCCAGCGCCAGGGCAAGGCCAACCAGGCATTGCAGGGCCAGGAGCTGGAACAGATGGCGGCGCTGGACA
CCGCGGCCGCGCGGTTCCTGCAGGCTGCGGCGGCGCGTCTGGCGTGGTCGGCGCGCAGCACGCACCGGGCCCTCAAGGTT
GCACGTACTATTGCCGATCTATCGGGCTGCGGGACCGTGGGCGCCGCCCATGTGGCCGAAGCCGTGCAATACCGGCGCGC
CCTGCGCGCACCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.539

100

0.525
  comM Haemophilus influenzae Rd KW20

50.769

100

0.516
  comM Vibrio campbellii strain DS40M4

50.685

99.805

0.506
  comM Glaesserella parasuis strain SC1401

50.098

99.414

0.498
  comM Legionella pneumophila str. Paris

48.544

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.544

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.164

100

0.432