Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M8445_RS02565 Genome accession   NZ_CP115165
Coordinates   517242..518747 (+) Length   501 a.a.
NCBI ID   WP_273989431.1    Uniprot ID   -
Organism   Deinococcus aquaticus strain PB-314     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 512242..523747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8445_RS02545 (M8445_02545) - 512681..513727 (+) 1047 WP_273988203.1 transposase -
  M8445_RS02550 (M8445_02550) - 513756..514373 (+) 618 WP_273989428.1 hypothetical protein -
  M8445_RS02555 (M8445_02555) - 514487..516463 (+) 1977 WP_273989429.1 serine/threonine-protein kinase -
  M8445_RS02560 (M8445_02560) tatA 516645..517037 (+) 393 WP_273989430.1 twin-arginine translocase TatA/TatE family subunit -
  M8445_RS02565 (M8445_02565) comM 517242..518747 (+) 1506 WP_273989431.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M8445_RS02570 (M8445_02570) - 518824..519078 (-) 255 WP_273989432.1 hypothetical protein -
  M8445_RS02575 (M8445_02575) - 519261..520268 (+) 1008 WP_273989433.1 hypothetical protein -
  M8445_RS02580 (M8445_02580) - 520258..521379 (+) 1122 WP_273989435.1 [LysW]-lysine hydrolase -
  M8445_RS02585 (M8445_02585) - 521458..523203 (+) 1746 WP_273989436.1 SLC13 family permease -
  M8445_RS02590 (M8445_02590) - 523344..523505 (-) 162 WP_189064298.1 hypothetical protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 52167.20 Da        Isoelectric Point: 8.5112

>NTDB_id=768506 M8445_RS02565 WP_273989431.1 517242..518747(+) (comM) [Deinococcus aquaticus strain PB-314]
MLARARSVALIGVDAVPVEVEVDVSPGLPAFTVVGLPDQAVSEARERVRAAVRNAGLPFPAARITVNLAPADLRKEGPLY
DLPIALGLLAAQDLLPAAALAGTLVAGELALDGSLRPISGAVNLALLAAQLGLPALLPLGNAPEAALIEGVPVFGASTLA
EAARHLGGSHPLPVTPPPEAQVLEDTLLDLADLKGQSGARRALEIAVAGGHNLLMVGSPGSGKTMLARRAPGLLPPLTRA
EALEVTRIHSAAGLLASRGRLNLGAPFRAPHHTVSDAGLIGGGGVPRPGEVSLAHRGLLFLDEFPEFSRKALETLRQPLE
DGTVVISRARATVQYPARFQLIAAMNPCPCGHLGDPEKACVCTPSERMRYAARLSGPLLDRIDLTVRVPRLTVEELTRAP
EPEPSAPVRSRVAAARERMLDRQGGRNADLGGQALRQHAPLAAGPEGFARAAAKQLGLTGRGYDRLLRVARTVADLAGSP
DIREAHLAEAVTYRPRDLGTG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=768506 M8445_RS02565 WP_273989431.1 517242..518747(+) (comM) [Deinococcus aquaticus strain PB-314]
ATGCTGGCCCGCGCCCGCAGTGTCGCGTTGATCGGCGTGGACGCCGTTCCGGTCGAGGTCGAAGTGGACGTCTCGCCGGG
CCTGCCGGCCTTCACGGTGGTGGGGCTGCCGGATCAGGCGGTCAGCGAGGCGCGTGAGCGGGTGCGGGCCGCCGTGCGGA
ACGCGGGCCTGCCGTTCCCGGCGGCGCGCATCACGGTGAACCTCGCCCCGGCGGACCTGCGCAAGGAGGGGCCGCTGTAC
GACCTGCCCATCGCGCTGGGGCTGCTGGCCGCGCAGGACCTGCTGCCGGCGGCGGCGCTGGCGGGCACGCTGGTGGCGGG
TGAACTGGCGCTGGACGGCAGCCTGCGGCCCATCTCGGGCGCGGTGAATCTGGCGCTGCTGGCGGCGCAGCTGGGGTTGC
CGGCGCTGCTGCCCCTGGGGAACGCACCCGAGGCGGCGCTGATCGAGGGCGTACCGGTGTTCGGGGCGAGCACCCTGGCG
GAGGCGGCCCGGCACCTGGGCGGCTCCCACCCGCTGCCGGTCACGCCTCCGCCGGAGGCGCAGGTGCTGGAGGACACGCT
GCTGGACCTCGCGGACCTCAAGGGCCAGAGCGGGGCGCGCCGGGCGCTGGAGATCGCCGTGGCGGGCGGGCATAACCTGC
TGATGGTCGGGTCGCCCGGCAGCGGGAAGACCATGCTGGCGCGCCGCGCGCCGGGTCTGCTGCCGCCCCTGACGCGCGCC
GAGGCGCTGGAGGTCACGCGGATTCACTCGGCGGCGGGGCTGCTGGCGTCGCGGGGCCGCCTGAACCTGGGCGCGCCGTT
CCGAGCGCCGCACCACACGGTCTCGGATGCCGGGCTGATCGGTGGGGGCGGCGTGCCCCGGCCCGGCGAGGTCAGCCTCG
CGCACCGGGGCCTGCTGTTCCTGGATGAATTTCCGGAGTTCAGCCGCAAGGCCCTGGAGACGCTGCGGCAACCGCTGGAG
GACGGCACGGTCGTGATCAGCCGCGCGCGGGCGACCGTGCAGTACCCGGCACGCTTTCAGCTGATTGCGGCCATGAACCC
CTGCCCGTGCGGGCACCTGGGCGACCCGGAGAAGGCCTGCGTGTGCACGCCGTCCGAACGGATGCGGTACGCGGCGAGGC
TGTCGGGGCCGCTGCTGGACCGCATCGACCTGACCGTGCGGGTGCCCCGCCTGACCGTGGAAGAACTGACGCGCGCGCCC
GAACCGGAACCGAGCGCCCCGGTGCGCTCACGGGTGGCGGCGGCCCGCGAGCGCATGCTGGACCGGCAGGGGGGCAGGAA
TGCCGACCTGGGTGGACAGGCCCTGCGGCAGCACGCGCCGCTGGCCGCCGGTCCCGAGGGCTTTGCGCGGGCCGCCGCGA
AACAACTGGGCCTGACCGGGCGCGGGTACGACCGCCTGCTACGCGTGGCCCGCACGGTCGCGGATCTTGCGGGCAGCCCC
GACATCCGCGAGGCGCATCTGGCCGAGGCGGTCACGTACCGGCCGCGCGACCTGGGCACCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-395)

Subunit ChlI of Mg-chelatase (ChlI)

(20-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.297

99.601

0.481
  comM Vibrio campbellii strain DS40M4

47.295

99.601

0.471
  comM Haemophilus influenzae Rd KW20

46.215

100

0.463
  comM Glaesserella parasuis strain SC1401

45.347

100

0.457
  comM Legionella pneumophila str. Paris

45.657

98.802

0.451
  comM Legionella pneumophila strain ERS1305867

45.657

98.802

0.451
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.447