Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MUY00_RS04390 Genome accession   NZ_CP115150
Coordinates   904221..905741 (-) Length   506 a.a.
NCBI ID   WP_058656403.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. xiangfangensis strain MDCL 3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 899221..910741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY00_RS04380 (MUY00_04380) hdfR 902914..903735 (-) 822 WP_003860190.1 HTH-type transcriptional regulator HdfR -
  MUY00_RS04385 (MUY00_04385) - 903854..904192 (+) 339 WP_006808641.1 DUF413 domain-containing protein -
  MUY00_RS04390 (MUY00_04390) comM 904221..905741 (-) 1521 WP_058656403.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MUY00_RS04395 (MUY00_04395) ilvL 906083..906181 (+) 99 WP_001311244.1 ilv operon leader peptide -
  MUY00_RS04400 (MUY00_04400) ilvX 906268..906318 (+) 51 WP_192930497.1 peptide IlvX -
  MUY00_RS04405 (MUY00_04405) ilvG 906321..907967 (+) 1647 WP_274413699.1 acetolactate synthase 2 catalytic subunit -
  MUY00_RS04410 (MUY00_04410) ilvM 907964..908227 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  MUY00_RS04415 (MUY00_04415) ilvE 908246..909175 (+) 930 WP_003860182.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54721.63 Da        Isoelectric Point: 7.3360

>NTDB_id=768309 MUY00_RS04390 WP_058656403.1 904221..905741(-) (comM) [Enterobacter hormaechei subsp. xiangfangensis strain MDCL 3]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAAVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=768309 MUY00_RS04390 WP_058656403.1 904221..905741(-) (comM) [Enterobacter hormaechei subsp. xiangfangensis strain MDCL 3]
ATGTCACTATCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGACAGGGCTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGGGGCGTTCCCGGTGCAATATCGGGTGCGCTTGAAGCCATACGTGCGGGAA
GACAAATCATTGTAGCTAATGAAAACGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTAGCGCCAGATTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAACGGCCTGTTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCCTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGTCCGGGTGAAATCTCACTGGCGC
ACAACGGCATTCTCTTCCTGGATGAATTGCCAGAGTTTGAACGCCGAGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCACCGCCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGCTGTGCGTGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437