Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O9240_RS26285 Genome accession   NZ_CP115129
Coordinates   5351873..5353393 (+) Length   506 a.a.
NCBI ID   WP_326971332.1    Uniprot ID   -
Organism   Citrobacter freundii strain 2021CK-01443     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5346873..5358393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O9240_RS26265 (O9240_26250) - 5348429..5349358 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  O9240_RS26270 (O9240_26255) ilvM 5349376..5349639 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  O9240_RS26275 (O9240_26260) ilvG 5349636..5351282 (-) 1647 WP_061547934.1 acetolactate synthase 2 catalytic subunit -
  O9240_RS26280 (O9240_26265) ilvL 5351422..5351520 (-) 99 WP_001311244.1 ilv operon leader peptide -
  O9240_RS26285 (O9240_26270) comM 5351873..5353393 (+) 1521 WP_326971332.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O9240_RS26290 (O9240_26275) maoP 5353419..5353757 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  O9240_RS26295 (O9240_26280) hdfR 5353864..5354709 (+) 846 WP_085952510.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55107.05 Da        Isoelectric Point: 7.2884

>NTDB_id=768286 O9240_RS26285 WP_326971332.1 5351873..5353393(+) (comM) [Citrobacter freundii strain 2021CK-01443]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAVINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTPHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDKPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPMPPPGILSQNQVKG
EDSATVKQRVMAARDRQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=768286 O9240_RS26285 WP_326971332.1 5351873..5353393(+) (comM) [Citrobacter freundii strain 2021CK-01443]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCGGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTGAAAGAGGCCCGCGATCGGGTTCGCAGTGCGGTAA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCAGCCGATCTCCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTCCCCATAATCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTTGGACTAATACACGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGACAGTATGCGCATTCCTCGAAGGTAAGCATGATTTAGACAAACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCTGCTGGCGGTCATAACCTCT
TACTCATCGGCCCTCCGGGTACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACACGCTACAGAAACAGTGGAAACAACGCCCTTTTCG
CTCTCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACACTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTATCCCGCACCAGAGCAAAAATCACCTATCCCGCTCGCTTTCAACTCATAGCCGCTATGAATCCCAG
CCCAACAGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTATCTCTCGAAATCCCTATGCCACCGCCCGGGATACTCAGCCAGAACCAGGTAAAAGGG
GAAGACAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGATCGTCAGTATCGACGACAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGCAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAGCAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Haemophilus influenzae Rd KW20

57.255

100

0.577
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.46

99.605

0.423