Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ICA20_RS24355 Genome accession   NZ_CP115032
Coordinates   5022712..5024232 (+) Length   506 a.a.
NCBI ID   WP_038634615.1    Uniprot ID   -
Organism   Citrobacter sp. C5_2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5017712..5029232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICA20_RS24335 (ICA20_024335) - 5019268..5020197 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  ICA20_RS24340 (ICA20_024340) ilvM 5020215..5020478 (-) 264 WP_038634609.1 acetolactate synthase 2 small subunit -
  ICA20_RS24345 (ICA20_024345) ilvG 5020475..5022121 (-) 1647 WP_038634612.1 acetolactate synthase 2 catalytic subunit -
  ICA20_RS24350 (ICA20_024350) ilvL 5022261..5022359 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ICA20_RS24355 (ICA20_024355) comM 5022712..5024232 (+) 1521 WP_038634615.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ICA20_RS24360 (ICA20_024360) maoP 5024258..5024596 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  ICA20_RS24365 (ICA20_024365) hdfR 5024703..5025548 (+) 846 WP_087856748.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55221.17 Da        Isoelectric Point: 7.0252

>NTDB_id=767967 ICA20_RS24355 WP_038634615.1 5022712..5024232(+) (comM) [Citrobacter sp. C5_2]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTAHNLDTYELVGELALTGTLRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QSVCAFLEGKHDLDRPLSADFTPEPLADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSTTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
EDSATVKQRVIAAQERQYRRQNKLNAHLDSQDIHEYCRLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADLEQCDHI
TRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=767967 ICA20_RS24355 WP_038634615.1 5022712..5024232(+) (comM) [Citrobacter sp. C5_2]
ATGTCACTATCGATTGTTCATACACGCGCCGCGCTTGGCGTGAATGCGCCAGCCATTACCATTGAGGTACATATCAGCAA
TGGTCTACCTGGTTTAACCATGGTGGGATTGCCAGAAACAACGGTGAAAGAGGCCCGCGATCGGGTTCGCAGTGCGATTA
TTAATAGTGGGTATGAATTCCCGGCGAAGAAGATAACCATTAACCTCGCTCCTGCCGATCTTCCCAAAGAAGGAGGGCGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACAGCCCATAATCTCGATACCTACGAGCTGGT
AGGCGAATTAGCGCTTACAGGCACGCTACGCGGCGTTCCAGGAGCGATTTCAAGCGCAACCGAAGCCATACGAGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACATGGTGAAGGGTGTCTGATTGCCGATCACCTA
CAGTCCGTATGCGCATTTCTCGAAGGGAAGCATGATTTAGACAGACCGTTATCTGCAGACTTCACGCCAGAGCCATTAGC
CGATGATCTGAGCGATGTCATCGGTCAGGAACAAGGCAAACGCGGGTTGGAGCTCACTGCGGCTGGCGGTCACAACCTGC
TGCTTATCGGCCCTCCGGGGACGGGAAAGACCATGCTGGCCAGTCGCCTCAGAGGACTACTTCCGCCGCTCAGCAACGAT
GAGGCACTAGAAAGTGCTGCGATACTCAGCCTGGTCAATTCCACTACGATACAAAAACAATGGAAGCAGCGCCCCTTTCG
CTCACCGCATCACAGTGCTTCATTAACCGCCATGGTAGGTGGCGGGTCTATTCCTGCGCCGGGAGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAATTACCTGAGTTTGAGCGACGCACGTTGGATGCCCTGCGTGAACCTATCGAGTCC
GGGCAGATCCATTTATCCCGCACTCGGGCTAAAATAACCTACCCTGCACGCTTTCAACTCATTGCTGCAATGAATCCAAG
CCCAACGGGTCATTATCAGGGGAACCATAACCGCTGCACCCCAGAGCAGACGCTGCGTTACCTCAATCGATTATCAGGAC
CGTTTCTTGACCGTTTCGATCTCTCCCTCGAAATCCCTTTGCCTCCGCCCGGCATACTCAGCCAGAGTGCGATGAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATCGCCGCACAAGAGCGTCAGTATCGGCGGCAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATACATGAATATTGCCGACTTCGCAGTGATGATGCGCAGTGGCTTGAAGAGACATTAGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGATTGATAAAGGTCGCCCGAACCATCGCGGATCTCGAGCAATGTGATCATATT
ACCCGTCAGCACTTGCAGGAGGCCGTTGGGTATAGGGCGATAGACAGGTTACTCATTCATTTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.73

100

0.583
  comM Glaesserella parasuis strain SC1401

57.76

100

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Vibrio campbellii strain DS40M4

57.54

99.605

0.573
  comM Legionella pneumophila str. Paris

47.082

98.221

0.462
  comM Legionella pneumophila strain ERS1305867

47.082

98.221

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.056

99.605

0.429