Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IB196_RS20655 Genome accession   NZ_CP115031
Coordinates   4313556..4314080 (-) Length   174 a.a.
NCBI ID   WP_188232242.1    Uniprot ID   A0AAU7HWW3
Organism   Citrobacter sp. C6_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4308556..4319080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB196_RS20645 (IB196_020645) - 4310399..4310680 (+) 282 WP_005132615.1 YjcB family protein -
  IB196_RS20650 (IB196_020650) - 4310764..4313073 (-) 2310 WP_149691939.1 autotransporter outer membrane beta-barrel domain-containing protein -
  IB196_RS20655 (IB196_020655) ssb 4313556..4314080 (-) 525 WP_188232242.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IB196_RS20660 (IB196_020660) uvrA 4314332..4317154 (+) 2823 WP_005132620.1 excinuclease ABC subunit UvrA -
  IB196_RS20665 (IB196_020665) - 4317278..4317634 (-) 357 WP_005132621.1 MmcQ/YjbR family DNA-binding protein -
  IB196_RS20670 (IB196_020670) aphA 4317762..4318475 (-) 714 WP_182289514.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18651.68 Da        Isoelectric Point: 5.2456

>NTDB_id=767941 IB196_RS20655 WP_188232242.1 4313556..4314080(-) (ssb) [Citrobacter sp. C6_1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPASGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=767941 IB196_RS20655 WP_188232242.1 4313556..4314080(-) (ssb) [Citrobacter sp. C6_1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AGTGGCACCGTGTTGTGCTGTTCGGCAAATTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAATACACCACTGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGGGGTCGTCAGGGCGGCGGCGCGCCAGCAAGTGGTGGTCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGTGGCGCACAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.379