NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	O6P33_RS01560	Genome accession	NZ_CP114976
Coordinates	314633..316129 (+)	Length	498 a.a.
NCBI ID	WP_269818502.1	Uniprot ID	A0AAE9VTH2
Organism	Denitrificimonas caeni strain CE14
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 309633..321129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O6P33_RS01530 (O6P33_01530)	-	311050..311889 (+)	840	WP_269818495.1	Tim44 domain-containing protein	-
O6P33_RS01535 (O6P33_01535)	-	311963..312370 (+)	408	WP_269818496.1	SMI1/KNR4 family protein	-
O6P33_RS01540 (O6P33_01540)	-	312446..312922 (+)	477	WP_269818497.1	acyl-CoA thioesterase	-
O6P33_RS01545 (O6P33_01545)	-	313005..313316 (-)	312	WP_269818498.1	hypothetical protein	-
O6P33_RS01550 (O6P33_01550)	glnK	313692..314030 (-)	339	WP_269818499.1	P-II family nitrogen regulator	-
O6P33_RS01555 (O6P33_01555)	-	314312..314584 (+)	273	WP_269818501.1	accessory factor UbiK family protein	-
O6P33_RS01560 (O6P33_01560)	comM	314633..316129 (+)	1497	WP_269818502.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
O6P33_RS01565 (O6P33_01565)	-	316175..316561 (-)	387	WP_269818503.1	SCP2 sterol-binding domain-containing protein	-
O6P33_RS01570 (O6P33_01570)	-	317018..317575 (+)	558	WP_269818504.1	chorismate--pyruvate lyase family protein	-
O6P33_RS01575 (O6P33_01575)	ubiA	317626..318522 (+)	897	WP_269818505.1	4-hydroxybenzoate octaprenyltransferase	-
O6P33_RS01580 (O6P33_01580)	-	318570..319463 (-)	894	WP_269818506.1	peptidoglycan DD-metalloendopeptidase family protein	-
O6P33_RS01585 (O6P33_01585)	-	319598..320515 (-)	918	WP_269818507.1	response regulator	-
O6P33_RS01590 (O6P33_01590)	secB	320608..321084 (-)	477	WP_269818508.1	protein-export chaperone SecB	-

Sequence

Protein

Download Length: 498 a.a. Molecular weight: 54019.16 Da Isoelectric Point: 8.3549

                                >NTDB_id=767634 O6P33_RS01560 WP_269818502.1 314633..316129(+) (comM) [Denitrificimonas caeni strain CE14]

MSLAIMHSRAQIGVEAPAVSVEIHLTNGLPSLTIVGLPETAVRESKDRVRSAILNSALEFPRKRITLNLAPADLPKEGGR

FDLAIALGLLAASAQLPGGCLDDFECLGELALSGHVRPVRGVLPAALAARDAGRALVVALANAEEACLASGLKVYAIDHL

LELVAHFNQQNTLKPYQSQGLLAQPPSYPDLLEVQGQDAAKRALVVAAAGMHNLLLSGPPGTGKTLLASRLPGLLPPLTE

HEALEVAAVQSMINLEPLRNLPQRPFRQPHHSASSPALVGGGSRPQPGEISLAHQGILFLDELPEFDRKVLEVLREPLES

GYIVIARAHSKVRFPARFQLVAAMNPCPCGYFADPNGRCRCTQEQVQRYRNKLSGPLLDRIDLHISVARETTSLRKPKTP

GLSSAQAVSQVCAARQRQLQRQGCSNAQLDLNALRQHCTLTEEDRTWLEQASERLNLSLRATHRVLKVARTLADLAASSM

ISREHLAEALQYRFHEQQ

Nucleotide

Download Length: 1497 bp

                                >NTDB_id=767634 O6P33_RS01560 WP_269818502.1 314633..316129(+) (comM) [Denitrificimonas caeni strain CE14]

ATGTCACTCGCCATTATGCACAGCCGCGCCCAAATTGGTGTTGAAGCACCGGCCGTTAGCGTAGAAATTCACCTGACTAA

CGGCTTACCGTCGCTAACCATTGTTGGCTTACCAGAAACAGCTGTACGTGAAAGTAAAGACCGTGTGCGTAGCGCTATTT

TAAACAGCGCCCTAGAGTTTCCACGCAAACGCATCACCCTTAATTTAGCACCAGCGGATCTCCCCAAAGAAGGCGGGCGC

TTTGATTTAGCCATTGCCCTAGGCTTACTAGCCGCCAGCGCACAGCTACCCGGTGGTTGTCTGGATGACTTTGAATGTTT

GGGTGAGCTGGCTCTCTCAGGCCATGTGCGTCCAGTGCGTGGCGTGCTCCCCGCTGCCTTAGCCGCCCGCGATGCCGGAC

GCGCATTGGTAGTAGCTTTAGCCAATGCCGAAGAAGCCTGCTTAGCCAGCGGCTTAAAAGTCTATGCCATAGATCATTTA

CTGGAGCTTGTTGCCCATTTCAACCAGCAAAACACTTTAAAACCCTATCAGTCGCAGGGTTTATTAGCACAACCACCAAG

CTACCCCGACTTACTCGAGGTGCAAGGCCAAGATGCAGCCAAGCGTGCTTTGGTGGTCGCCGCGGCCGGCATGCATAATT

TGCTTCTCAGTGGGCCACCGGGCACCGGCAAAACTCTTTTGGCCAGCCGCTTACCTGGCCTACTGCCGCCGCTCACGGAG

CATGAGGCACTAGAAGTGGCAGCTGTGCAGTCAATGATCAACCTTGAACCACTGCGCAACTTACCGCAGCGGCCTTTTCG

CCAACCGCACCACAGTGCTTCCAGTCCAGCCTTAGTCGGCGGTGGCAGCCGCCCACAACCAGGAGAAATCAGCTTAGCTC

ACCAAGGTATTTTATTTTTAGATGAGCTTCCGGAGTTTGACCGTAAGGTCTTGGAAGTTTTGCGTGAGCCACTCGAGTCC

GGCTATATAGTGATTGCCCGAGCCCACAGCAAAGTGCGCTTTCCAGCTCGTTTTCAGCTGGTGGCAGCGATGAACCCTTG

TCCCTGTGGGTACTTTGCCGACCCCAATGGGCGCTGTCGCTGTACCCAAGAGCAAGTGCAGCGCTATCGCAACAAGCTCT

CGGGGCCGCTGCTGGACCGCATTGACTTACATATTAGCGTGGCCCGTGAAACCACCTCATTGCGTAAACCAAAAACACCG

GGACTCAGCTCTGCACAAGCAGTTAGTCAAGTCTGTGCTGCACGGCAGCGCCAACTGCAACGGCAAGGTTGCAGTAACGC

GCAATTGGATTTAAATGCCTTACGTCAGCACTGCACTCTTACAGAGGAGGACCGTACCTGGCTCGAGCAAGCCAGCGAGC

GTTTAAACTTATCGCTACGGGCCACTCATCGAGTCTTAAAAGTCGCACGGACCTTGGCAGATCTGGCGGCCAGTAGCATG

ATTTCCCGTGAACACTTAGCTGAAGCCCTGCAATACCGTTTTCACGAGCAGCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	55.354	99.398	0.55
comM	Vibrio campbellii strain DS40M4	54.747	99.398	0.544
comM	Haemophilus influenzae Rd KW20	53.6	100	0.538
comM	Glaesserella parasuis strain SC1401	53.507	100	0.536
comM	Legionella pneumophila str. Paris	49.307	100	0.5
comM	Legionella pneumophila strain ERS1305867	49.307	100	0.5
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.732	100	0.452

Detailed information NTG0767634