Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | O6U12_RS04695 | Genome accession | NZ_CP114899 |
| Coordinates | 865164..865499 (-) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 860164..870499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6U12_RS04645 (O6U12_04645) | comGC | 860189..860485 (+) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
| O6U12_RS04650 (O6U12_04650) | comGD | 860475..860906 (+) | 432 | WP_017696194.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| O6U12_RS04655 (O6U12_04655) | comGE | 860890..861237 (+) | 348 | WP_017696195.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| O6U12_RS04660 (O6U12_04660) | comGF | 861263..861646 (+) | 384 | WP_017696196.1 | ComG operon protein ComGF | Machinery gene |
| O6U12_RS04665 (O6U12_04665) | comGG | 861647..862021 (+) | 375 | WP_017696197.1 | ComG operon protein ComGG | Machinery gene |
| O6U12_RS04670 (O6U12_04670) | spoIITA | 862092..862271 (+) | 180 | WP_014480252.1 | YqzE family protein | - |
| O6U12_RS04675 (O6U12_04675) | yqzG | 862313..862639 (-) | 327 | WP_026113671.1 | YqzG/YhdC family protein | - |
| O6U12_RS04680 (O6U12_04680) | tapA | 862910..863665 (+) | 756 | WP_017696199.1 | amyloid fiber anchoring/assembly protein TapA | - |
| O6U12_RS04685 (O6U12_04685) | sipW | 863649..864221 (+) | 573 | WP_080031082.1 | signal peptidase I SipW | - |
| O6U12_RS04690 (O6U12_04690) | tasA | 864286..865071 (+) | 786 | WP_017696201.1 | biofilm matrix protein TasA | - |
| O6U12_RS04695 (O6U12_04695) | sinR | 865164..865499 (-) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| O6U12_RS04700 (O6U12_04700) | sinI | 865533..865706 (-) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| O6U12_RS04705 (O6U12_04705) | yqhG | 865889..866683 (-) | 795 | WP_017696202.1 | YqhG family protein | - |
| O6U12_RS04710 (O6U12_04710) | hepAA | 866704..868377 (-) | 1674 | WP_017696203.1 | DEAD/DEAH box helicase | - |
| O6U12_RS04715 (O6U12_04715) | gcvT | 868818..869906 (+) | 1089 | WP_017696204.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=767578 O6U12_RS04695 WP_003226345.1 865164..865499(-) (sinR) [Bacillus subtilis strain]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=767578 O6U12_RS04695 WP_003226345.1 865164..865499(-) (sinR) [Bacillus subtilis strain]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |