Detailed information NTG0767573

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F0318_RS05020
• Genome accession: NZ_CP126598
• Coordinates: 1028391..1029383 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ec1120
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1023391..1034383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0318_RS04990 (F0318_0004980)	ispD	1023452..1024162 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F0318_RS04995 (F0318_0004985)	ispF	1024162..1024641 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F0318_RS05000 (F0318_0004990)	truD	1024638..1025687 (+)	1050	WP_001583842.1	tRNA pseudouridine(13) synthase TruD	-
F0318_RS05005 (F0318_0004995)	surE	1025668..1026429 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F0318_RS05010 (F0318_0005000)	pcm	1026423..1027049 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F0318_RS05015 (F0318_0005005)	nlpD	1027234..1028328 (+)	1095	WP_312038769.1	murein hydrolase activator NlpD	-
F0318_RS05020 (F0318_0005010)	rpoS	1028391..1029383 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F0318_RS05025 (F0318_0005015)	ygbN	1029477..1030841 (-)	1365	WP_149488244.1	GntP family transporter	-
F0318_RS05030 (F0318_0005020)	ygbM	1030930..1031706 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
F0318_RS05035 (F0318_0005025)	ygbL	1031711..1032349 (-)	639	WP_001278994.1	aldolase	-
F0318_RS05040 (F0318_0005030)	otnK	1032346..1033608 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=767573 F0318_RS05020 WP_000081550.1 1028391..1029383(+) (rpoS) [Escherichia coli strain Ec1120]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=767573 F0318_RS05020 WP_000081550.1 1028391..1029383(+) (rpoS) [Escherichia coli strain Ec1120]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715