Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F0318_RS05295 Genome accession   NZ_CP126598
Coordinates   1081210..1081725 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain Ec1120     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076210..1086725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0318_RS05250 (F0318_0005240) csrA 1076797..1076982 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  F0318_RS05280 (F0318_0005270) yqaB 1078440..1079006 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F0318_RS05285 (F0318_0005275) yqaA 1079003..1079431 (+) 429 WP_001287454.1 YqaA family protein -
  F0318_RS05290 (F0318_0005280) gshA 1079504..1081060 (+) 1557 WP_000611812.1 glutamate--cysteine ligase -
  F0318_RS05295 (F0318_0005285) luxS 1081210..1081725 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  F0318_RS05300 (F0318_0005290) emrB 1081789..1083327 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  F0318_RS05305 (F0318_0005295) emrA 1083344..1084516 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F0318_RS05310 (F0318_0005300) emrR 1084643..1085173 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F0318_RS05315 (F0318_0005305) ygaH 1085264..1085599 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  F0318_RS05320 (F0318_0005310) ygaZ 1085589..1086326 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=767576 F0318_RS05295 WP_001130211.1 1081210..1081725(+) (luxS) [Escherichia coli strain Ec1120]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=767576 F0318_RS05295 WP_001130211.1 1081210..1081725(+) (luxS) [Escherichia coli strain Ec1120]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731