Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   F0318_RS05625 Genome accession   NZ_CP126598
Coordinates   1141801..1142538 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Ec1120     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1136801..1147538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0318_RS05595 (F0318_0005585) yfiL 1136959..1137324 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  F0318_RS05600 (F0318_0005590) aroF 1137534..1138604 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  F0318_RS05605 (F0318_0005595) tyrA 1138615..1139736 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  F0318_RS05610 (F0318_0005600) pheA 1139779..1140939 (-) 1161 WP_149488307.1 bifunctional chorismate mutase/prephenate dehydratase -
  F0318_RS05615 (F0318_0005605) pheL 1141038..1141085 (-) 48 WP_010723158.1 phe operon leader peptide -
  F0318_RS05620 (F0318_0005610) raiA 1141189..1141530 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  F0318_RS05625 (F0318_0005615) comL 1141801..1142538 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  F0318_RS05630 (F0318_0005620) rluD 1142673..1143653 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  F0318_RS05635 (F0318_0005625) yfiH 1143650..1144381 (+) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  F0318_RS05640 (F0318_0005630) clpC 1144511..1147084 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=767577 F0318_RS05625 WP_000197686.1 1141801..1142538(-) (comL) [Escherichia coli strain Ec1120]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=767577 F0318_RS05625 WP_000197686.1 1141801..1142538(-) (comL) [Escherichia coli strain Ec1120]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376