Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   QPK28_RS15435 Genome accession   NZ_CP126576
Coordinates   2911296..2911970 (-) Length   224 a.a.
NCBI ID   WP_003184045.1    Uniprot ID   Q65GL3
Organism   Bacillus licheniformis strain CQMB003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2906296..2916970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS15400 - 2906407..2906835 (+) 429 WP_003184032.1 SRPBCC domain-containing protein -
  QPK28_RS15405 - 2906835..2907155 (+) 321 WP_003184034.1 metalloregulator ArsR/SmtB family transcription factor -
  QPK28_RS15410 minD 2907200..2908006 (-) 807 WP_003184035.1 septum site-determining protein MinD -
  QPK28_RS15415 minC 2908009..2908689 (-) 681 WP_011198163.1 septum site-determining protein MinC -
  QPK28_RS15420 mreD 2908744..2909262 (-) 519 WP_003184039.1 rod shape-determining protein MreD -
  QPK28_RS15425 mreC 2909259..2910167 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  QPK28_RS15430 - 2910198..2911208 (-) 1011 WP_003184042.1 rod shape-determining protein -
  QPK28_RS15435 ysxA/radC 2911296..2911970 (-) 675 WP_003184045.1 DNA repair protein RadC Machinery gene
  QPK28_RS15440 - 2912025..2912597 (-) 573 WP_003184048.1 Maf family protein -
  QPK28_RS15445 - 2912751..2913782 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  QPK28_RS15450 comC 2913986..2914735 (-) 750 WP_011198164.1 A24 family peptidase Machinery gene
  QPK28_RS15455 - 2914878..2916176 (-) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25239.11 Da        Isoelectric Point: 8.3107

>NTDB_id=767513 QPK28_RS15435 WP_003184045.1 2911296..2911970(-) (ysxA/radC) [Bacillus licheniformis strain CQMB003]
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=767513 QPK28_RS15435 WP_003184045.1 2911296..2911970(-) (ysxA/radC) [Bacillus licheniformis strain CQMB003]
TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA
TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT
TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG
CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA
AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA
ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA
GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT
AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA
AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65GL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

80.804

100

0.808
  radC Streptococcus pneumoniae TIGR4

46.667

93.75

0.438
  radC Streptococcus pneumoniae R6

46.19

93.75

0.433
  radC Streptococcus pneumoniae D39

46.19

93.75

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

44.762

93.75

0.42