Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QPK28_RS15450 Genome accession   NZ_CP126576
Coordinates   2913986..2914735 (-) Length   249 a.a.
NCBI ID   WP_011198164.1    Uniprot ID   Q8VQ80
Organism   Bacillus licheniformis strain CQMB003     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2908986..2919735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS15425 mreC 2909259..2910167 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  QPK28_RS15430 - 2910198..2911208 (-) 1011 WP_003184042.1 rod shape-determining protein -
  QPK28_RS15435 ysxA/radC 2911296..2911970 (-) 675 WP_003184045.1 DNA repair protein RadC Machinery gene
  QPK28_RS15440 - 2912025..2912597 (-) 573 WP_003184048.1 Maf family protein -
  QPK28_RS15445 - 2912751..2913782 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  QPK28_RS15450 comC 2913986..2914735 (-) 750 WP_011198164.1 A24 family peptidase Machinery gene
  QPK28_RS15455 - 2914878..2916176 (-) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QPK28_RS15460 - 2916258..2918900 (-) 2643 WP_003184055.1 valine--tRNA ligase -
  QPK28_RS15465 - 2919362..2919553 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26954.53 Da        Isoelectric Point: 8.7373

>NTDB_id=767514 QPK28_RS15450 WP_011198164.1 2913986..2914735(-) (comC) [Bacillus licheniformis strain CQMB003]
MFIFYLFTAGLVLGSFFNSAGRRIPEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=767514 QPK28_RS15450 WP_011198164.1 2913986..2914735(-) (comC) [Bacillus licheniformis strain CQMB003]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTCCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)

Type IV leader peptidase family (Peptidase_A24)

(102-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.347

97.189

0.47