Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QPK28_RS15265 Genome accession   NZ_CP126576
Coordinates   2885651..2886655 (-) Length   334 a.a.
NCBI ID   WP_003183985.1    Uniprot ID   Q65GP6
Organism   Bacillus licheniformis strain CQMB003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2880651..2891655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS15235 - 2881519..2882169 (-) 651 WP_003183974.1 DUF421 domain-containing protein -
  QPK28_RS15240 - 2882325..2882708 (+) 384 WP_003183976.1 TIGR04086 family membrane protein -
  QPK28_RS15245 yajC 2882905..2883168 (-) 264 WP_085959518.1 preprotein translocase subunit YajC -
  QPK28_RS15250 tgt 2883215..2884360 (-) 1146 WP_003183980.1 tRNA guanosine(34) transglycosylase Tgt -
  QPK28_RS15255 queA 2884389..2885417 (-) 1029 WP_003183982.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QPK28_RS15260 - 2885458..2885658 (-) 201 WP_003183984.1 DUF2905 domain-containing protein -
  QPK28_RS15265 ruvB 2885651..2886655 (-) 1005 WP_003183985.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QPK28_RS15270 ruvA 2886665..2887270 (-) 606 WP_003183986.1 Holliday junction branch migration protein RuvA Machinery gene
  QPK28_RS15275 - 2887393..2887914 (-) 522 WP_003183987.1 intercompartmental signaling factor BofC -
  QPK28_RS15280 - 2888157..2888807 (+) 651 WP_003183988.1 protein kinase family protein -
  QPK28_RS15285 - 2888878..2889000 (+) 123 WP_003183989.1 hypothetical protein -
  QPK28_RS15290 - 2889085..2889264 (-) 180 WP_003183990.1 small acid-soluble spore protein H -
  QPK28_RS15295 - 2889360..2889824 (-) 465 WP_003183991.1 DinB family protein -
  QPK28_RS15300 - 2889885..2890595 (-) 711 WP_003183992.1 poly-gamma-glutamate hydrolase family protein -
  QPK28_RS15305 - 2891009..2891188 (+) 180 WP_003183993.1 hypothetical protein -
  QPK28_RS15310 - 2891280..2891606 (-) 327 WP_003183994.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37286.73 Da        Isoelectric Point: 4.9033

>NTDB_id=767511 QPK28_RS15265 WP_003183985.1 2885651..2886655(-) (ruvB) [Bacillus licheniformis strain CQMB003]
MDERLVSSELDNHESAIEQSLRPQRLAQYIGQEKVKDNLKVFIEAAKMREETLDHVLLYGPPGLGKTTLAAIIANEMGVN
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTRDELSEIVIRTAELFEVDIDSLSALEIARRSRGTPRIANRLLRRVRDFAQVLGNSSI
TEEVAVDALERLQVDKLGLDHIDRKLLMGMIEKFGGGPVGIDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
DVYSHFKMEVPNHD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=767511 QPK28_RS15265 WP_003183985.1 2885651..2886655(-) (ruvB) [Bacillus licheniformis strain CQMB003]
ATGGATGAGCGGCTTGTATCAAGTGAACTAGACAACCATGAATCAGCGATTGAGCAAAGTCTGCGTCCGCAAAGACTTGC
TCAGTATATCGGCCAGGAAAAAGTGAAAGATAACCTCAAGGTTTTCATCGAAGCTGCGAAAATGCGGGAGGAAACCCTTG
ACCATGTCTTATTGTACGGGCCGCCGGGATTGGGAAAAACGACGCTCGCCGCGATCATCGCCAACGAAATGGGAGTCAAT
CTCAGAACGACGTCAGGTCCGGCGATCGAGCGCCCCGGCGATTTGGCGGCGATATTAACGGCTCTGGAGCCAGGTGACGT
TTTATTTATAGACGAGATCCACCGCCTGCACCGTTCGATCGAAGAGGTGCTGTATCCTGCGATGGAAGATTTCTGCCTTG
ATATCGTGATCGGCAAAGGACCGTCGGCACGTTCTGTGAGGCTCGATCTTCCTCCTTTTACCCTCGTCGGCGCGACCACA
AGGGTTGGGCTTTTAACCGCGCCTCTCAGGGACAGGTTCGGCGTTCTGTCGAGGCTTGAGTATTACACGCGTGATGAGCT
TTCAGAAATCGTGATCAGAACGGCAGAGCTGTTTGAAGTCGACATCGATTCGCTCTCGGCTCTCGAAATCGCGAGACGGT
CAAGAGGGACGCCGCGGATTGCCAACAGGCTTTTAAGGAGGGTCAGGGATTTTGCCCAGGTGCTTGGAAACAGCTCCATC
ACAGAGGAAGTGGCGGTTGATGCGCTTGAACGCCTCCAGGTTGATAAACTCGGGCTTGACCATATCGACCGCAAGCTTTT
GATGGGCATGATCGAAAAATTTGGCGGCGGCCCCGTCGGCATCGATACGATTTCGGCTACTATCGGTGAGGAGTCTCACA
CGATTGAGGATGTGTATGAGCCGTATCTTCTTCAAATCGGTTTTATTCAAAGAACGCCGCGGGGGCGCATCGTAACCCCT
GATGTTTACAGCCACTTTAAAATGGAGGTTCCGAACCATGACTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-327)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65GP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

88.024

100

0.88
  ruvB Streptococcus pneumoniae TIGR4

61.35

97.605

0.599
  ruvB Streptococcus pneumoniae R6

61.35

97.605

0.599
  ruvB Streptococcus pneumoniae D39

61.35

97.605

0.599
  ruvB Synechocystis sp. PCC 6803

57.402

99.102

0.569
  ruvB Helicobacter pylori 26695

53.012

99.401

0.527