NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	QPK28_RS15270	Genome accession	NZ_CP126576
Coordinates	2886665..2887270 (-)	Length	201 a.a.
NCBI ID	WP_003183986.1	Uniprot ID	Q65GP5
Organism	Bacillus licheniformis strain CQMB003
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2881665..2892270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPK28_RS15240	-	2882325..2882708 (+)	384	WP_003183976.1	TIGR04086 family membrane protein	-
QPK28_RS15245	yajC	2882905..2883168 (-)	264	WP_085959518.1	preprotein translocase subunit YajC	-
QPK28_RS15250	tgt	2883215..2884360 (-)	1146	WP_003183980.1	tRNA guanosine(34) transglycosylase Tgt	-
QPK28_RS15255	queA	2884389..2885417 (-)	1029	WP_003183982.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
QPK28_RS15260	-	2885458..2885658 (-)	201	WP_003183984.1	DUF2905 domain-containing protein	-
QPK28_RS15265	ruvB	2885651..2886655 (-)	1005	WP_003183985.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QPK28_RS15270	ruvA	2886665..2887270 (-)	606	WP_003183986.1	Holliday junction branch migration protein RuvA	Machinery gene
QPK28_RS15275	-	2887393..2887914 (-)	522	WP_003183987.1	intercompartmental signaling factor BofC	-
QPK28_RS15280	-	2888157..2888807 (+)	651	WP_003183988.1	protein kinase family protein	-
QPK28_RS15285	-	2888878..2889000 (+)	123	WP_003183989.1	hypothetical protein	-
QPK28_RS15290	-	2889085..2889264 (-)	180	WP_003183990.1	small acid-soluble spore protein H	-
QPK28_RS15295	-	2889360..2889824 (-)	465	WP_003183991.1	DinB family protein	-
QPK28_RS15300	-	2889885..2890595 (-)	711	WP_003183992.1	poly-gamma-glutamate hydrolase family protein	-
QPK28_RS15305	-	2891009..2891188 (+)	180	WP_003183993.1	hypothetical protein	-
QPK28_RS15310	-	2891280..2891606 (-)	327	WP_003183994.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22508.86 Da Isoelectric Point: 5.7383

                                >NTDB_id=767512 QPK28_RS15270 WP_003183986.1 2886665..2887270(-) (ruvA) [Bacillus licheniformis strain CQMB003]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKKNSKETIYTYHYVREDTNALYGFSTREEKMLFTKMLNVTGIGP

KGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADAVPEIAADLFNHEEREQIHEAATALEEAL

EALRALGYSDREIKKVQPHLKKEEALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=767512 QPK28_RS15270 WP_003183986.1 2886665..2887270(-) (ruvA) [Bacillus licheniformis strain CQMB003]

TTGATCGAATTCGTAAAAGGGACGATTGATTATGTATCGCCCCAATATATTGTCATTGAAAACGGCGGGATCGGCTATCA

GATCTTCACGCCAAATCCGTTTATTTATAAGAAAAACAGCAAAGAAACAATCTATACATACCATTATGTAAGAGAAGACA

CGAATGCGCTGTACGGCTTTTCGACAAGGGAAGAAAAAATGCTGTTTACGAAAATGCTGAATGTTACGGGGATCGGACCA

AAAGGAGCGCTTGCGATCCTCGCTTCCGGCGATCCGGGAGCGGTGATTGAAGCGATCGAGAATGAGGACGAAGCATTTCT

CGTCAAATTTCCCGGCGTAGGCAAAAAAACGGCAAGGCAGATCATCCTTGACCTGAAAGGGAAGCTTGCGGATGCCGTTC

CTGAAATCGCTGCCGATCTGTTTAACCATGAAGAGCGGGAGCAAATTCATGAGGCGGCAACGGCTCTTGAGGAAGCGCTT

GAAGCATTGAGGGCGCTCGGCTATTCCGATCGGGAAATTAAAAAAGTCCAGCCTCATTTGAAAAAGGAAGAGGCGCTTTC

GACAGATCAATACGTTAAAAAAGCATTGCAAAAATTGTTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q65GP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	83.582	100	0.836
ruvA	Streptococcus pneumoniae R6	40.291	100	0.413
ruvA	Streptococcus pneumoniae D39	40.291	100	0.413
ruvA	Streptococcus pneumoniae TIGR4	40.291	100	0.413

Detailed information NTG0767512