Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O2T12_RS20015 Genome accession   NZ_CP114886
Coordinates   4820672..4822189 (+) Length   505 a.a.
NCBI ID   WP_269675367.1    Uniprot ID   -
Organism   Endozoicomonas sp. GU-1 strain Ap1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4815672..4827189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T12_RS20005 (O2T12_20005) - 4816544..4817254 (-) 711 WP_269675365.1 hypothetical protein -
  O2T12_RS20010 (O2T12_20010) - 4817465..4820404 (-) 2940 WP_269675366.1 hypothetical protein -
  O2T12_RS20015 (O2T12_20015) comM 4820672..4822189 (+) 1518 WP_269675367.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O2T12_RS20020 (O2T12_20020) - 4822227..4822850 (-) 624 WP_269676471.1 hypothetical protein -
  O2T12_RS20025 (O2T12_20025) ptsG 4823021..4824490 (-) 1470 WP_269676472.1 PTS glucose transporter subunit IIBC -
  O2T12_RS20030 (O2T12_20030) - 4825060..4825719 (-) 660 WP_269675370.1 OmpA family protein -
  O2T12_RS20035 (O2T12_20035) - 4825739..4826380 (-) 642 WP_269675371.1 MBL fold metallo-hydrolase -
  O2T12_RS20040 (O2T12_20040) - 4826519..4826785 (-) 267 WP_269675372.1 hypothetical protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54876.80 Da        Isoelectric Point: 7.1097

>NTDB_id=767373 O2T12_RS20015 WP_269675367.1 4820672..4822189(+) (comM) [Endozoicomonas sp. GU-1 strain Ap1-3]
MPSTLAQVYTRANQGIRAPAVSVEVHLSQGLPGLNIVGLPEAAVRESKDRVRSALINSGYEFPDGRITVNLAPADLPKEG
GRFDLPIALGILVASGQLPGEALEDREFLGELALSGHLRPVRAVLPASLACKDINRALILPEQNASVAAMVSSVTIIGTR
SLPEVCAFLLEKTRIEPAKPDHNSFTTNYPDLADVRGQEQAKRALLIAATGSHHLLLFGPPGTGKTMLASRLPGLLPPLT
ESEALDVAAIHSLTSSSMDTLWQRPFRTPHHSSSSVSLVGGGSIPQPGEISFAHHGVLFLDEMPEFARAALEILREPLEN
GEVVITRAKGQERFPARFQLVGAMNPCPCGYLGDSQRTCRCSPDQIRRYRNKLSGPLLDRIDLQIEVPSQTIQTMMEPAV
QDNDETGSEQLRELVINARKRQHARQGKINCQLSSRELFEVCALGEKEKELITRASAQLQISTRGLHRILRVARTIADLA
GSASVLSPHLGEALQYRQLDRQSLE

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=767373 O2T12_RS20015 WP_269675367.1 4820672..4822189(+) (comM) [Endozoicomonas sp. GU-1 strain Ap1-3]
ATGCCTTCAACACTGGCGCAGGTTTACACTCGGGCAAATCAGGGCATCCGTGCACCTGCGGTTTCGGTAGAAGTCCATCT
TTCTCAGGGCCTGCCCGGTTTGAATATTGTCGGCCTGCCGGAAGCGGCGGTTCGCGAGAGTAAGGACCGGGTGCGCAGTG
CACTTATTAATAGTGGCTATGAATTTCCCGATGGTCGCATCACGGTGAATTTAGCCCCGGCCGACCTCCCGAAAGAAGGC
GGCCGCTTTGATCTGCCCATTGCCCTGGGCATTCTGGTGGCTTCGGGACAACTGCCGGGTGAGGCTCTTGAAGATAGGGA
GTTCCTTGGTGAGCTGGCGCTTTCTGGCCACCTTCGCCCTGTCCGGGCGGTGCTTCCTGCTTCATTAGCCTGCAAAGACA
TCAACAGGGCATTGATTCTTCCAGAGCAGAATGCCTCTGTTGCCGCCATGGTCAGCAGCGTCACGATTATTGGCACCCGC
AGTCTCCCGGAGGTTTGCGCTTTCCTGCTGGAAAAGACGCGGATTGAACCGGCAAAACCCGACCACAACAGTTTTACAAC
AAACTATCCAGACCTGGCGGATGTCCGGGGGCAGGAGCAAGCCAAAAGAGCGTTACTGATTGCCGCTACCGGCTCGCACC
ACCTGCTCCTCTTTGGTCCACCCGGTACCGGGAAAACCATGCTGGCCAGTCGTCTGCCCGGATTGCTGCCACCGCTGACA
GAGAGCGAAGCCCTTGATGTGGCCGCAATTCATTCACTCACATCCAGCTCCATGGACACCCTCTGGCAGCGCCCTTTTCG
CACACCGCACCACTCCTCTTCATCGGTTTCGCTGGTGGGCGGTGGCAGCATACCGCAACCGGGGGAGATCTCTTTTGCCC
ATCACGGTGTTCTGTTTCTGGATGAAATGCCGGAGTTTGCCCGCGCGGCCCTGGAAATACTCAGAGAGCCCCTGGAAAAT
GGTGAGGTAGTCATCACCAGGGCCAAAGGTCAGGAGCGTTTTCCAGCCCGATTCCAGCTGGTTGGTGCCATGAACCCCTG
CCCCTGTGGTTACCTGGGTGATAGTCAGCGAACCTGCCGGTGTTCACCGGACCAGATCAGACGCTACCGGAACAAATTAT
CCGGGCCATTACTGGATCGTATTGACCTTCAGATTGAGGTGCCATCCCAGACTATCCAAACCATGATGGAACCTGCTGTT
CAGGACAACGATGAAACCGGTTCAGAACAGCTGAGAGAGCTGGTGATCAATGCCCGGAAGAGACAGCACGCCAGACAGGG
AAAAATCAACTGCCAACTGTCGTCCAGGGAATTGTTTGAAGTGTGTGCGCTGGGTGAAAAGGAGAAAGAGCTGATCACCA
GGGCATCCGCACAACTGCAAATTTCAACCCGAGGGCTGCATCGGATTTTACGAGTGGCCAGAACCATTGCTGACCTTGCT
GGCAGTGCCTCGGTGCTAAGCCCACACCTGGGCGAAGCCCTGCAATATCGACAGTTGGATCGTCAGTCACTGGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(23-144)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.491

99.208

0.541
  comM Vibrio campbellii strain DS40M4

53.6

99.01

0.531
  comM Haemophilus influenzae Rd KW20

52.559

100

0.529
  comM Glaesserella parasuis strain SC1401

52.165

100

0.525
  comM Legionella pneumophila str. Paris

51.004

98.614

0.503
  comM Legionella pneumophila strain ERS1305867

51.004

98.614

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.312

100

0.459