Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O5O48_RS04045 Genome accession   NZ_CP114836
Coordinates   900422..901927 (+) Length   501 a.a.
NCBI ID   WP_269688220.1    Uniprot ID   -
Organism   Halopseudomonas sp. MFKK-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 895422..906927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O48_RS04020 - 895778..896443 (+) 666 WP_269688217.1 response regulator transcription factor -
  O5O48_RS04025 - 896421..897764 (+) 1344 WP_269688218.1 ATP-binding protein -
  O5O48_RS04030 - 897883..899130 (-) 1248 WP_088276302.1 ammonium transporter -
  O5O48_RS04035 glnK 899182..899520 (-) 339 WP_088276303.1 P-II family nitrogen regulator -
  O5O48_RS04040 - 900093..900338 (+) 246 WP_269688219.1 accessory factor UbiK family protein -
  O5O48_RS04045 comM 900422..901927 (+) 1506 WP_269688220.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O5O48_RS04050 - 902055..903761 (-) 1707 WP_140418580.1 bifunctional diguanylate cyclase/phosphodiesterase -
  O5O48_RS04055 rep 904064..906073 (+) 2010 WP_228245657.1 DNA helicase Rep -
  O5O48_RS04060 - 906133..906555 (-) 423 WP_160003183.1 c-type cytochrome -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53510.40 Da        Isoelectric Point: 7.8827

>NTDB_id=767221 O5O48_RS04045 WP_269688220.1 900422..901927(+) (comM) [Halopseudomonas sp. MFKK-1]
MSLATIHSRARLGIDAPAVQVEVHLANGMPSLTLVGLPETAVRESKDRVRSALLNAQLEFPGSKRITISLAPADLPKDGG
RFDLAIALGLLAASGQIPAQALTDCECIGELALSGELRPIQGVLPVALACRDAGRKLILPAANAAEAALVSGIELIAADH
LLPLCAHLRGEQRLPDLPPTAPSEPARHADLADVQGQEQAKRALIIAASGGHNLLLFGPPGTGKTLLASRLPGILPPLAE
QEALEVAAIQSVCDRMPLSAWPARPFRSPHHGASAAALVGGGSQPRPGEISQAHHGVLFLDELPEFDRKVLEMLREPLES
GAIHIARAREQLRFPARFQLVAAMNPCPCGYQGDPSSRCRCTPEQVQRYRSKLSGPLLDRIDLHLAMRNEPFSLQGNNEP
GRPDSATAAAQVAAARARQLNRQQGLNAHMGLESLRTHCKLSDADGQWLEQAVTRLGLSHRASHRVLKVARTLADLDAVA
QISRSHLAEALQYRQLDRQPG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=767221 O5O48_RS04045 WP_269688220.1 900422..901927(+) (comM) [Halopseudomonas sp. MFKK-1]
ATGTCCCTGGCCACCATCCACAGCCGCGCGCGTCTGGGTATCGACGCGCCGGCCGTCCAGGTCGAAGTCCATCTTGCCAA
CGGTATGCCCAGCCTGACCCTGGTCGGCTTGCCGGAAACGGCGGTCCGTGAAAGCAAGGACCGGGTGCGCAGCGCGTTGC
TGAACGCGCAGCTGGAGTTCCCGGGCAGCAAGCGCATCACCATCAGCCTGGCGCCCGCCGATCTGCCCAAGGATGGCGGC
CGCTTTGATCTGGCCATCGCCCTCGGGCTGCTGGCGGCAAGCGGGCAGATTCCGGCGCAGGCGCTGACCGACTGCGAGTG
CATCGGCGAGCTGGCGCTGTCCGGCGAGCTGCGACCGATCCAGGGCGTGCTGCCGGTGGCGCTGGCCTGCCGCGATGCCG
GTCGCAAGCTGATTCTGCCGGCCGCTAACGCGGCCGAAGCCGCCCTGGTCAGCGGGATCGAACTGATCGCTGCCGATCAT
CTGCTGCCGCTATGTGCGCACTTGCGCGGTGAGCAGCGCTTGCCCGACCTCCCCCCGACAGCGCCCTCAGAGCCAGCCAG
GCATGCCGACCTCGCCGACGTACAGGGACAGGAGCAGGCCAAAAGGGCGCTGATCATCGCCGCAAGCGGCGGTCACAATC
TGCTGCTGTTCGGGCCACCCGGAACCGGCAAGACCCTGCTGGCCAGCCGTCTGCCCGGCATTCTGCCGCCACTTGCGGAG
CAGGAAGCACTCGAGGTCGCGGCGATTCAATCGGTCTGCGACCGCATGCCGCTGAGCGCCTGGCCTGCGCGCCCCTTCCG
CTCGCCCCATCACGGTGCATCCGCTGCAGCGCTGGTTGGCGGCGGCAGCCAGCCACGCCCCGGTGAAATCAGCCAGGCAC
ATCATGGCGTGCTGTTTCTGGATGAGTTGCCGGAGTTCGATCGTAAGGTACTGGAGATGCTGCGTGAGCCACTGGAGTCC
GGTGCGATTCACATCGCCCGCGCCCGCGAGCAACTGCGCTTTCCTGCCCGATTTCAACTGGTAGCGGCGATGAACCCCTG
CCCCTGCGGCTATCAGGGTGACCCATCGAGCCGCTGCCGCTGCACGCCGGAGCAGGTTCAGCGCTACCGCAGCAAGCTGT
CGGGCCCCCTTTTGGACCGCATCGACCTGCATCTGGCGATGCGCAACGAGCCATTCAGCCTGCAGGGCAACAACGAGCCC
GGCCGGCCGGACAGCGCGACTGCTGCGGCGCAGGTGGCAGCCGCCAGGGCGCGCCAGCTGAATCGGCAGCAGGGTCTCAA
TGCCCATATGGGACTGGAGAGCTTGCGTACGCACTGCAAGCTGAGCGACGCCGATGGTCAGTGGCTGGAGCAGGCGGTCA
CCCGCCTTGGGCTCTCCCATCGGGCCAGTCACCGGGTACTCAAGGTCGCGCGGACGCTGGCGGATCTGGACGCCGTAGCG
CAGATCAGCCGTTCACATTTGGCAGAAGCGCTGCAATATCGGCAGCTGGACCGCCAGCCCGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.09

100

0.551
  comM Vibrio campbellii strain DS40M4

54.491

100

0.545
  comM Glaesserella parasuis strain SC1401

53.465

100

0.539
  comM Haemophilus influenzae Rd KW20

52.663

100

0.533
  comM Legionella pneumophila str. Paris

49.8

99.8

0.497
  comM Legionella pneumophila strain ERS1305867

49.8

99.8

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.459