Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O4D10_RS19265 Genome accession   NZ_CP114795
Coordinates   4523875..4525395 (+) Length   506 a.a.
NCBI ID   WP_059030664.1    Uniprot ID   -
Organism   Xanthomonas citri pv. citri strain CM-BD-sm     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4518875..4530395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4D10_RS19245 (O4D10_19190) - 4519723..4520379 (+) 657 WP_386339345.1 RIO1 family regulatory kinase/ATPase -
  O4D10_RS19250 (O4D10_19195) - 4520616..4522568 (-) 1953 WP_386339348.1 beta-N-acetylglucosaminidase domain-containing protein -
  O4D10_RS19255 (O4D10_19200) - 4523052..4523426 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  O4D10_RS19260 (O4D10_19205) - 4523581..4523859 (+) 279 WP_005914378.1 accessory factor UbiK family protein -
  O4D10_RS19265 (O4D10_19210) comM 4523875..4525395 (+) 1521 WP_059030664.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O4D10_RS19270 (O4D10_19215) - 4525750..4526259 (+) 510 WP_015471471.1 lipocalin family protein -
  O4D10_RS19275 (O4D10_19220) - 4526499..4526675 (-) 177 WP_003486502.1 hypothetical protein -
  O4D10_RS19280 (O4D10_19225) - 4527058..4528620 (+) 1563 WP_386339351.1 EAL domain-containing protein -
  O4D10_RS19285 (O4D10_19230) - 4528685..4529806 (-) 1122 WP_386339354.1 fatty acid desaturase family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53853.55 Da        Isoelectric Point: 8.3399

>NTDB_id=767164 O4D10_RS19265 WP_059030664.1 4523875..4525395(+) (comM) [Xanthomonas citri pv. citri strain CM-BD-sm]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEQLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=767164 O4D10_RS19265 WP_059030664.1 4523875..4525395(+) (comM) [Xanthomonas citri pv. citri strain CM-BD-sm]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGTGTGCGCGCTGCCCTGC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTACCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGTGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAACCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCCGGTTGCGGCAAGACGCTGCTGGCTTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCAATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAATGGCAACGGCAAACCCTGGAAGTCTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACAGCTGCAGCTGTCCGCACGATCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCA
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455