Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R67_RS00620 Genome accession   NZ_AP022110
Coordinates   129528..131045 (-) Length   505 a.a.
NCBI ID   WP_182956207.1    Uniprot ID   -
Organism   Aeromonas caviae strain WP5-W18-ESBL-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 124528..136045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R67_RS00595 (WP5W18E02_01120) - 125664..126299 (-) 636 WP_182956201.1 nicotinamidase -
  H7R67_RS00600 (WP5W18E02_01130) - 126374..127024 (+) 651 WP_029314880.1 NUDIX hydrolase -
  H7R67_RS00605 (WP5W18E02_01140) - 127101..127586 (+) 486 WP_069652406.1 DUF523 domain-containing protein -
  H7R67_RS00610 (WP5W18E02_01150) - 127532..128488 (-) 957 WP_113977655.1 acyltransferase -
  H7R67_RS00615 (WP5W18E02_01160) - 128496..129395 (-) 900 WP_182956204.1 acyltransferase -
  H7R67_RS00620 (WP5W18E02_01170) comM 129528..131045 (-) 1518 WP_182956207.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R67_RS00625 (WP5W18E02_01180) ilvG 131430..133076 (+) 1647 WP_182956210.1 acetolactate synthase 2 catalytic subunit -
  H7R67_RS00630 (WP5W18E02_01190) ilvM 133073..133324 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  H7R67_RS00635 (WP5W18E02_01200) - 133337..134281 (+) 945 WP_182956213.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54697.57 Da        Isoelectric Point: 7.4895

>NTDB_id=76716 H7R67_RS00620 WP_182956207.1 129528..131045(-) (comM) [Aeromonas caviae strain WP5-W18-ESBL-02]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVHGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSGQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=76716 H7R67_RS00620 WP_182956207.1 129528..131045(-) (comM) [Aeromonas caviae strain WP5-W18-ESBL-02]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACGGTCAATCTGGCTCCTGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGACCTGGCCATCGCCATCGGTATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATATCTGCTTGATCACGAATTTTT
GGGGGAACTGGCCCTGACCGGCGAGATCCGTCCCGTGCACGGCGTGCTGCCCGCCGTGCTCGCCTGCCGGGACGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCCTCGCTGATCCAGGACGCCGAAGTGCGCACCGCCCATCAGTTG
CTGGCCGTCACTGCCTGGCTGGCGGGTCAATACGAGCTGCCGCTGCCGGATCCCCAGACCACGGAGGCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAATCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCTGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGCGGCCACTACGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCGGTCAGATCCGCGAGCGGGTATTGGGCGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAAC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGACACGCCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGACAGGCTGTTGTCACGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.406

0.632
  comM Vibrio campbellii strain DS40M4

62.55

99.406

0.622
  comM Haemophilus influenzae Rd KW20

61.858

100

0.62
  comM Glaesserella parasuis strain SC1401

60.63

100

0.61
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.465

Multiple sequence alignment