Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   O4M77_RS12980 Genome accession   NZ_CP114606
Coordinates   2730841..2731368 (-) Length   175 a.a.
NCBI ID   WP_323713546.1    Uniprot ID   A0AAU0NC88
Organism   Acinetobacter sp. YWS30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725841..2736368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS12960 (O4M77_12950) - 2726111..2726962 (-) 852 WP_180016593.1 hypothetical protein -
  O4M77_RS12965 (O4M77_12955) aroB 2726975..2728054 (-) 1080 WP_180013427.1 3-dehydroquinate synthase -
  O4M77_RS12970 (O4M77_12960) aroK 2728083..2728619 (-) 537 WP_005233593.1 shikimate kinase AroK -
  O4M77_RS12975 (O4M77_12965) pilQ 2728656..2730779 (-) 2124 WP_323714112.1 type IV pilus secretin PilQ family protein Machinery gene
  O4M77_RS12980 (O4M77_12970) pilP 2730841..2731368 (-) 528 WP_323713546.1 pilus assembly protein PilP Machinery gene
  O4M77_RS12985 (O4M77_12975) comO 2731368..2732084 (-) 717 WP_180013423.1 type 4a pilus biogenesis protein PilO Machinery gene
  O4M77_RS12990 (O4M77_12980) comN 2732081..2732719 (-) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  O4M77_RS12995 (O4M77_12985) pilM 2732719..2733777 (-) 1059 WP_180002742.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19368.55 Da        Isoelectric Point: 7.1662

>NTDB_id=766846 O4M77_RS12980 WP_323713546.1 2730841..2731368(-) (pilP) [Acinetobacter sp. YWS30-1]
MNIIKITSALTLGLLLVGCESRIDAVNQEMANIRNQPPLPIEPAPDFIPTEMFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVTRITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=766846 O4M77_RS12980 WP_323713546.1 2730841..2731368(-) (pilP) [Acinetobacter sp. YWS30-1]
ATGAATATCATTAAAATTACTTCAGCTTTAACGCTCGGACTTTTATTGGTGGGCTGCGAATCAAGAATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAACCACCATTACCGATTGAACCGGCACCAGATTTTATTCCGACAGAAATGTTTA
ATTACGCAGCTCATCAGCTGAAAAGTCCTTTCCTGCCAAGCTCTTTAGCAGCTGAATTGAAAATTATGGCAGGTAAGCGA
GTTTATCCGAACTTGTCACGCCAATTACAGCCTTTAGAAAGCTATCCACTCGAAACCTTAAGCATGAAAGGCAGTATGCG
GAATCAGGCGGGGCAGATTCTGGCTTTAATTCAAACGCCTGATGGGGAAATTGAGCGGATACAACGTGGCAGCTATATGG
GACTTAATCATGGTCGTGTAACGAGAATTACGCCGACACAGATTGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGACCACGAAGTCTGGTTTTGATTGGGCCAGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.714

100

0.777
  comL Acinetobacter baylyi ADP1

72.189

96.571

0.697