Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   O4M77_RS12985 Genome accession   NZ_CP114606
Coordinates   2731368..2732084 (-) Length   238 a.a.
NCBI ID   WP_180013423.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2726368..2737084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS12965 (O4M77_12955) aroB 2726975..2728054 (-) 1080 WP_180013427.1 3-dehydroquinate synthase -
  O4M77_RS12970 (O4M77_12960) aroK 2728083..2728619 (-) 537 WP_005233593.1 shikimate kinase AroK -
  O4M77_RS12975 (O4M77_12965) pilQ 2728656..2730779 (-) 2124 WP_323714112.1 type IV pilus secretin PilQ family protein Machinery gene
  O4M77_RS12980 (O4M77_12970) pilP 2730841..2731368 (-) 528 WP_323713546.1 pilus assembly protein PilP Machinery gene
  O4M77_RS12985 (O4M77_12975) comO 2731368..2732084 (-) 717 WP_180013423.1 type 4a pilus biogenesis protein PilO Machinery gene
  O4M77_RS12990 (O4M77_12980) comN 2732081..2732719 (-) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  O4M77_RS12995 (O4M77_12985) pilM 2732719..2733777 (-) 1059 WP_180002742.1 pilus assembly protein PilM Machinery gene
  O4M77_RS13000 (O4M77_12990) ponA 2733944..2736472 (+) 2529 WP_180033724.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27005.64 Da        Isoelectric Point: 4.7609

>NTDB_id=766847 O4M77_RS12985 WP_180013423.1 2731368..2732084(-) (comO) [Acinetobacter sp. YWS30-1]
MSNDGFDELSQDVVAVPRKKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIVILVFMLGYFGFIRGKIEAISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNADASSTPATTDTQGAQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=766847 O4M77_RS12985 WP_180013423.1 2731368..2732084(-) (comO) [Acinetobacter sp. YWS30-1]
ATGAGTAATGACGGATTCGATGAATTAAGCCAAGACGTAGTGGCTGTTCCTAGAAAAAAAATGACAGTTGAAAAATTCTT
TCAACAATTCAATACACTAGATCCAAATAATTATGGTAGCTGGCCATTATCAGTCAAAATTACCTGCTGGATCTTTATTG
TTATTCTGGTTTTTATGCTGGGGTATTTCGGGTTTATTCGCGGTAAGATAGAAGCGATTTCACAAGCCAGTGCTCAAGAA
CAAAACCTGTTAAATGAATTCCGGGAAAAGGAATCTAAGCTTCGTAATTTACAGCAGTATCAGATTCAGTTGCAGGAGAT
GGAAGCACGTTTTAATCAGCAATTGGAACAATTGCCGAAAGAAACTGAAATTCCAGGTCTGGTTGAAGATATTAACCTGA
GTGGAGTGAACTCCGGACTGAAATTCAAGAATATTCGCTTGGAACCTGAAATCAAACAGGAATTCTTTATTGAGCAGCCG
ATCGCGATTGAAGCCACTGGGGATTATCATGCCTTTGGTTCTTTTGTGAGCAGTATTGCAGGTCTTTCGCGCATCGTTAC
ACTGCATGACTTCACCATTACAGGGACTGAAAATAAAGAAAAGAAATCTGAAATTCCTGTCATTGATTATGTAGTAAAAG
CTAAAACCTACCGTTATGTAGGAAATGCAGACGCGTCATCTACTCCAGCTACAACTGATACGCAGGGAGCTCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.623

100

0.693
  pilO Acinetobacter baumannii D1279779

72.124

94.958

0.685