Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   O4M77_RS08650 Genome accession   NZ_CP114606
Coordinates   1843741..1844367 (-) Length   208 a.a.
NCBI ID   WP_312208913.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1838741..1849367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS08620 (O4M77_08605) - 1839104..1839538 (-) 435 WP_004783989.1 SRPBCC family protein -
  O4M77_RS08625 (O4M77_08610) tadA 1839601..1840116 (-) 516 WP_125279021.1 tRNA adenosine(34) deaminase TadA -
  O4M77_RS08630 (O4M77_08615) - 1840123..1841244 (-) 1122 WP_180138673.1 enoyl-CoA hydratase/isomerase family protein -
  O4M77_RS08635 (O4M77_08620) ung 1841241..1841954 (-) 714 WP_004783992.1 uracil-DNA glycosylase -
  O4M77_RS08640 (O4M77_08625) - 1842000..1842596 (-) 597 WP_159123992.1 6-pyruvoyl trahydropterin synthase family protein -
  O4M77_RS08645 (O4M77_08630) gspK 1842755..1843726 (-) 972 WP_323713342.1 type II secretion system minor pseudopilin GspK -
  O4M77_RS08650 (O4M77_08635) xcpW 1843741..1844367 (-) 627 WP_312208913.1 type II secretion system minor pseudopilin GspJ Machinery gene
  O4M77_RS08655 (O4M77_08640) gspI 1844364..1844948 (-) 585 WP_323713343.1 type II secretion system minor pseudopilin GspI -
  O4M77_RS08660 (O4M77_08645) - 1844938..1845486 (-) 549 WP_125279026.1 type II secretion system protein -
  O4M77_RS08665 (O4M77_08650) - 1845496..1846110 (-) 615 WP_125279027.1 TetR/AcrR family transcriptional regulator -
  O4M77_RS08670 (O4M77_08655) - 1846151..1846924 (-) 774 WP_166139436.1 TatD family hydrolase -
  O4M77_RS08675 (O4M77_08660) - 1846952..1847293 (-) 342 WP_005236142.1 PilZ domain-containing protein -
  O4M77_RS08680 (O4M77_08665) - 1847311..1848291 (-) 981 WP_291358737.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  O4M77_RS08685 (O4M77_08670) kdsB 1848306..1849067 (-) 762 WP_323713344.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23940.22 Da        Isoelectric Point: 4.7542

>NTDB_id=766835 O4M77_RS08650 WP_312208913.1 1843741..1844367(-) (xcpW) [Acinetobacter sp. YWS30-1]
MKSKGFTLVELLVAIAIFAVLSALGWKVFDYIVQTKDRNAVHEQRLSQLQDTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERVEYQYRADEQKLYRLKYRNLNQTGRDQPESSVLLSDVEQFQIVVLNPNEMTQWPD
SSFDLNQIEQKQRLPKGIKINLMVNGVSYEWIFSLLNTDFLLETQKLT

Nucleotide


Download         Length: 627 bp        

>NTDB_id=766835 O4M77_RS08650 WP_312208913.1 1843741..1844367(-) (xcpW) [Acinetobacter sp. YWS30-1]
ATGAAGTCTAAGGGATTTACGTTGGTCGAACTACTGGTTGCTATTGCTATTTTCGCCGTACTCTCTGCTCTAGGCTGGAA
AGTATTTGATTATATTGTACAAACCAAAGACCGTAATGCAGTGCATGAACAGCGCTTAAGTCAGTTGCAAGATACTTATC
AGCAGATCTTGCGTGATACGGTGCAGGCGGTGCCTTTAACGGCCAATATTAATGGTGATATTCAGCCGGCACTGGTTTTG
CAAAACGGACGTTTTAACTTTAGTAAGACTGGAGTCACCGATCCTCTGGAAGAGGGGATTTCTCCAGATGAACGGGTTGA
ATATCAGTACCGGGCAGATGAACAAAAACTCTATCGCCTGAAATACCGGAATTTAAACCAGACCGGGCGTGATCAACCTG
AATCCAGTGTGTTGTTGTCCGATGTTGAGCAGTTTCAGATCGTAGTACTTAATCCAAATGAAATGACCCAATGGCCAGAC
TCATCTTTTGATTTAAATCAGATTGAGCAAAAACAGCGTTTACCCAAAGGCATTAAAATTAACTTAATGGTTAATGGGGT
CAGTTATGAGTGGATTTTCAGTTTATTGAATACAGATTTCCTGCTTGAAACCCAAAAGTTAACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

60.199

96.635

0.582