Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O4M77_RS06515 Genome accession   NZ_CP114606
Coordinates   1400968..1402011 (-) Length   347 a.a.
NCBI ID   WP_004786150.1    Uniprot ID   A0AAU0NHN0
Organism   Acinetobacter sp. YWS30-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395968..1407011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS06485 (O4M77_06475) lpxD 1396360..1397430 (+) 1071 WP_200230558.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  O4M77_RS06490 (O4M77_06480) fabZ 1397436..1397921 (+) 486 WP_171064833.1 3-hydroxyacyl-ACP dehydratase FabZ -
  O4M77_RS06495 (O4M77_06485) lpxA 1397918..1398706 (+) 789 WP_004786156.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  O4M77_RS06500 (O4M77_06490) - 1398775..1399578 (-) 804 WP_323714033.1 YbgF trimerization domain-containing protein -
  O4M77_RS06510 (O4M77_06500) - 1400278..1400892 (-) 615 WP_180053924.1 regulatory protein RecX -
  O4M77_RS06515 (O4M77_06505) recA 1400968..1402011 (-) 1044 WP_004786150.1 recombinase RecA Machinery gene
  O4M77_RS06520 (O4M77_06510) - 1402157..1402597 (-) 441 WP_180104303.1 RNA-binding S4 domain-containing protein -
  O4M77_RS06525 (O4M77_06515) - 1402590..1403276 (-) 687 WP_179992315.1 HAD-IA family hydrolase -
  O4M77_RS06530 (O4M77_06520) - 1403289..1404140 (+) 852 WP_180053926.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  O4M77_RS06535 (O4M77_06525) - 1404201..1404950 (+) 750 WP_179992317.1 histidine phosphatase family protein -
  O4M77_RS06540 (O4M77_06530) - 1405072..1405194 (+) 123 WP_323714034.1 hypothetical protein -
  O4M77_RS06545 (O4M77_06535) rpsT 1405335..1405604 (-) 270 WP_004786139.1 30S ribosomal protein S20 -
  O4M77_RS06550 (O4M77_06540) - 1405818..1406483 (+) 666 WP_034702612.1 NAD-dependent epimerase/dehydratase family protein -
  O4M77_RS06555 (O4M77_06545) rraA 1406496..1407005 (+) 510 WP_125278329.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37777.24 Da        Isoelectric Point: 4.9603

>NTDB_id=766831 O4M77_RS06515 WP_004786150.1 1400968..1402011(-) (recA) [Acinetobacter sp. YWS30-1]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEEHKELADTIEK
LIREQLLTTGKVVEDKDEEEPADFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=766831 O4M77_RS06515 WP_004786150.1 1400968..1402011(-) (recA) [Acinetobacter sp. YWS30-1]
ATGGATGAGAATAAAAACAAGGCGCTCAATGCTGCCTTAAGCCAGATTGAAAAACAGTTTGGTAAAAACACAGTGATGCG
TCTTGGTGACAATACCGTGCAAGCAGTTGAAGCTGTATCTACAGGCTCTTTAACGCTTGATATTGCACTCGGTATTGGTG
GTTTACCGAAAGGCCGTATTATCGAGATTTATGGTCCTGAATCTTCAGGTAAAACCACAATGACATTGCAAGCGATTGCT
GAATGTCAAAAAGCTGGCGGTACATGTGCATTCATCGATGCCGAGCACGCGCTTGATCCTCAATATGCCCGTAAACTCGG
TGTAGATATTGATAACCTGCTGGTTTCTCAACCAGATAACGGTGAACAGGCACTTGAAATCGCTGACATGCTGGTACGTT
CTGGCGCAATTGACCTGATTGTAGTCGACTCTGTTGCTGCATTGACGCCTCGCGCCGAGATTGAAGGCGAAATGGGTGAC
TCACATATGGGTCTGCAAGCACGTTTGATGAGCCAGGCACTGCGTAAAATTACCGGTAATGCCAAGCGTTCAAACTGTAT
GGTGATTTTCATTAACCAGATCCGTATGAAGATTGGTGTAATGTTCGGTAGCCCGGAAACAACTACTGGTGGTAATGCAC
TAAAATTCTATGCTTCTGTACGTCTGGATATCCGCCGTATCGGTCAGGTGAAAGAAGGCGACGAGATTGTAGGTTCTGAA
ACCAAAGTCAAAGTTGTGAAAAATAAAATGGCGCCTCCATTCAGAGAAGCTCTGTTCCAGATTCTGTATGGTAAAGGTGT
TAACCATCTTGGTGAACTGATTGACCTTGCAGTACAGCAAGAAATTGTTCAGAAAGCGGGTGCATGGTATTCATATCAAG
GCGACAAGATTGGCCAAGGTAAGAACAATACCATCCGTTATCTGGAAGAACACAAAGAGCTGGCGGATACTATTGAAAAA
CTGATCCGTGAGCAACTGCTTACTACAGGCAAAGTAGTCGAAGATAAAGATGAAGAAGAACCAGCAGACTTTCTGGATGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.258

100

0.908
  recA Acinetobacter baylyi ADP1

89.143

100

0.899
  recA Pseudomonas stutzeri DSM 10701

75.988

94.813

0.72
  recA Vibrio cholerae strain A1552

74.312

94.236

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.236

0.7
  recA Glaesserella parasuis strain SC1401

70.393

95.389

0.671
  recA Ralstonia pseudosolanacearum GMI1000

72.93

90.49

0.66
  recA Neisseria gonorrhoeae MS11

67.284

93.372

0.628
  recA Neisseria gonorrhoeae MS11

67.284

93.372

0.628
  recA Neisseria gonorrhoeae strain FA1090

67.284

93.372

0.628
  recA Helicobacter pylori strain NCTC11637

63.717

97.695

0.622
  recA Helicobacter pylori 26695

63.422

97.695

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

97.983

0.62
  recA Streptococcus pneumoniae TIGR4

61.047

99.135

0.605
  recA Streptococcus pneumoniae Rx1

61.047

99.135

0.605
  recA Streptococcus pneumoniae D39

61.047

99.135

0.605
  recA Streptococcus pneumoniae R6

61.047

99.135

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.389

0.599
  recA Streptococcus mutans UA159

60.058

98.847

0.594
  recA Streptococcus mitis NCTC 12261

59.767

98.847

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

92.795

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.963

93.948

0.582
  recA Streptococcus mitis SK321

61.35

93.948

0.576
  recA Streptococcus pyogenes NZ131

61.538

93.66

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.084

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.507

0.545