Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O2U05_RS04270 Genome accession   NZ_CP114519
Coordinates   686688..687833 (+) Length   381 a.a.
NCBI ID   WP_283472481.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain S91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 681688..692833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2U05_RS04245 (O2U05_04240) pgsA 682182..682769 (+) 588 WP_003700569.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O2U05_RS04250 (O2U05_04245) ribD 683148..684245 (+) 1098 WP_283472474.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  O2U05_RS04255 (O2U05_04250) - 684245..684829 (+) 585 WP_283472475.1 riboflavin synthase -
  O2U05_RS04260 (O2U05_04255) ribA 684844..686040 (+) 1197 WP_283472477.1 GTP cyclohydrolase II -
  O2U05_RS04265 (O2U05_04260) ribE 686060..686521 (+) 462 WP_283472479.1 6,7-dimethyl-8-ribityllumazine synthase -
  O2U05_RS04270 (O2U05_04265) recA 686688..687833 (+) 1146 WP_283472481.1 recombinase RecA Machinery gene
  O2U05_RS04275 (O2U05_04270) rny 688008..689573 (+) 1566 WP_003700566.1 ribonuclease Y -
  O2U05_RS04280 (O2U05_04275) mutS 689740..692370 (+) 2631 WP_283472483.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41051.33 Da        Isoelectric Point: 4.7333

>NTDB_id=766220 O2U05_RS04270 WP_283472481.1 686688..687833(+) (recA) [Ligilactobacillus salivarius strain S91]
MANDKNKVQGDQPEERLKALDAALKKIEKKFGKGSIMKMGGKVDTKISTISSGSIAIDAGLGVGGYPRGRIIEIYGPESS
GKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIIVVDSVAALV
PKAEIEGEMGDSHVGLQARLMSQALRKLSGTINKTKTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEA
IKAKSEIIGNRTKIKFVKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGRENAKEYLS
EHEDEMNEINIKVREAYGIPDENGNVPESQDKNTTQSAMDDKATDIDDSEEVSLDVNDSDE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=766220 O2U05_RS04270 WP_283472481.1 686688..687833(+) (recA) [Ligilactobacillus salivarius strain S91]
GTGGCTAATGACAAAAATAAAGTTCAAGGTGATCAACCTGAAGAAAGATTAAAGGCTTTAGATGCAGCTTTAAAAAAGAT
TGAAAAAAAATTCGGTAAGGGTTCCATTATGAAAATGGGAGGAAAGGTAGATACAAAGATCTCTACTATTTCTAGTGGTT
CAATTGCTATTGATGCAGGATTAGGTGTAGGTGGTTATCCACGAGGACGTATTATTGAAATTTATGGTCCAGAAAGTTCT
GGTAAGACAACAGTTGCATTACATGCAGTTGCTGAAGTTCAAAAACGTGGTGGTACAGCAGCATATATTGATGCTGAAAA
TGCTTTGGATCCTGCATACGCTACTGCACTGGGAGTAAATATTGATGAATTGCTACTTTCACAACCAGACACTGGTGAAC
AAGGCTTAGAAATTGCTGATGCTTTGGTTTCATCTGGTGCAATTGATATAATTGTTGTTGACTCAGTGGCCGCTTTAGTA
CCTAAAGCTGAAATTGAGGGTGAAATGGGTGATTCTCATGTTGGGTTGCAAGCTCGTTTGATGTCACAGGCTTTGAGAAA
ACTTTCAGGTACAATCAATAAGACGAAGACGGTAGCTATATTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTG
GAAATCCCGAAACAACTCCTGGTGGTCGTGCTTTGAAGTTCTATTCAACTGTTAGAATGGAAGTGCGTCGTTCCGAAGCA
ATTAAGGCAAAATCTGAAATTATTGGTAATAGAACTAAGATTAAATTTGTGAAAAATAAGGTTGCTCCACCATTCAAAGT
AGCTGAAGTTGATATCATGTATGGTGAAGGTATTTCTAAAACTGGTGAATTACTGGATATGGCTGTTGAGAAGGATATCA
TTCACAAGAGTGGTTCTTGGTTCTCTTATGGAGATACAAGAATAGGTCAAGGACGTGAAAATGCTAAGGAATATCTTAGT
GAACATGAAGACGAGATGAATGAAATTAATATCAAAGTCAGAGAAGCATACGGTATACCGGATGAAAATGGAAATGTACC
TGAATCTCAAGATAAGAATACTACTCAATCTGCTATGGATGACAAGGCTACAGATATAGATGATTCTGAAGAAGTATCTT
TAGATGTAAATGATAGTGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.444

94.488

0.751
  recA Bacillus subtilis subsp. subtilis str. 168

75

87.139

0.654
  recA Streptococcus pneumoniae R6

65.768

97.375

0.64
  recA Streptococcus pneumoniae TIGR4

65.768

97.375

0.64
  recA Streptococcus pneumoniae Rx1

65.768

97.375

0.64
  recA Streptococcus pneumoniae D39

65.768

97.375

0.64
  recA Streptococcus mitis NCTC 12261

65.323

97.638

0.638
  recA Streptococcus mitis SK321

64.96

97.375

0.633
  recA Lactococcus lactis subsp. cremoris KW2

70.571

87.402

0.617
  recA Streptococcus mutans UA159

63.934

96.063

0.614
  recA Streptococcus pyogenes NZ131

70.213

86.352

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

86.089

0.551
  recA Glaesserella parasuis strain SC1401

56.63

95.013

0.538
  recA Vibrio cholerae strain A1552

58.046

91.339

0.53
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.046

91.339

0.53
  recA Neisseria gonorrhoeae strain FA1090

63.175

82.677

0.522
  recA Neisseria gonorrhoeae MS11

63.175

82.677

0.522
  recA Neisseria gonorrhoeae MS11

63.175

82.677

0.522
  recA Ralstonia pseudosolanacearum GMI1000

63.578

82.152

0.522
  recA Helicobacter pylori strain NCTC11637

58.631

88.189

0.517
  recA Acinetobacter baumannii D1279779

59.159

87.402

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.939

85.827

0.514
  recA Helicobacter pylori 26695

58.333

88.189

0.514
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

85.039

0.512
  recA Acinetobacter baylyi ADP1

60.377

83.465

0.504
  recA Pseudomonas stutzeri DSM 10701

58.879

84.252

0.496