Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O3S98_RS07400 Genome accession   NZ_CP114456
Coordinates   1566029..1567072 (-) Length   347 a.a.
NCBI ID   WP_002487418.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SE 4.6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1561029..1572072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S98_RS07380 (O3S98_07380) - 1561111..1562871 (-) 1761 WP_002495756.1 2-oxoacid:acceptor oxidoreductase subunit alpha -
  O3S98_RS07385 (O3S98_07385) - 1562984..1563778 (-) 795 WP_002446316.1 TIGR00282 family metallophosphoesterase -
  O3S98_RS07390 (O3S98_07390) - 1563941..1564156 (+) 216 WP_002446315.1 hypothetical protein -
  O3S98_RS07395 (O3S98_07395) rny 1564245..1565804 (-) 1560 WP_001829512.1 ribonuclease Y -
  O3S98_RS07400 (O3S98_07400) recA 1566029..1567072 (-) 1044 WP_002487418.1 recombinase RecA Machinery gene
  O3S98_RS07405 (O3S98_07405) - 1567243..1568388 (-) 1146 WP_060545790.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  O3S98_RS07410 (O3S98_07410) pgsA 1568836..1569417 (-) 582 WP_002446313.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O3S98_RS07415 (O3S98_07415) - 1569446..1569838 (-) 393 WP_060545792.1 helix-turn-helix domain-containing protein -
  O3S98_RS07420 (O3S98_07420) - 1569857..1570684 (-) 828 WP_002457352.1 YmfK family protein -
  O3S98_RS07425 (O3S98_07425) - 1570837..1571541 (-) 705 WP_002457353.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37684.53 Da        Isoelectric Point: 5.0892

>NTDB_id=766062 O3S98_RS07400 WP_002487418.1 1566029..1567072(-) (recA) [Staphylococcus epidermidis strain SE 4.6]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVDENEDDSPKTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=766062 O3S98_RS07400 WP_002487418.1 1566029..1567072(-) (recA) [Staphylococcus epidermidis strain SE 4.6]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTCATTAAAAATATGGAAAAATCTTTTGGTAAAGGTGCCGTTATGAA
GTTAGGCGATAATAAAGGTCGCAGAGTATCAAGTACTTCAAGTGGTTCTGTCACAGTTGATAATGCATTAGGGGTTGGAG
GTTATCCTAAAGGAAGAATTATCGAAATATATGGACCTGAAAGTTCGGGTAAGACGACAGTAGCTTTACATGCTATCGCT
GAAGTACAAAAAAACGGCGGTGTAGCAGCATTTATCGATGCCGAACACGCTCTCGATCCAGTATATGCACAAGCATTAGG
TGTAGATATTGACAATTTATACTTATCTCAACCAGATCATGGTGAGCAAGGTCTTGAAATCGCCGAAGCTTTTGTTCGTA
GTGGTGCTGTGGACATTGTTGTTGTCGATTCAGTAGCAGCCTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCATTAAGAAAGTTATCAGGGGCTATTTCTAAATCTAATACTAC
AGCTATATTTATTAACCAAATTCGTGAAAAGGTTGGCGTGATGTTCGGGAACCCTGAAACAACGCCCGGTGGTAGAGCCC
TAAAATTCTATAGTTCTGTACGTTTAGAGGTAAGAAGAGCAGAGCAGTTAAAACAAGGTCAAGACATTGTAGGTAACAGA
ACTAAAATAAAAGTTGTGAAAAATAAAGTTGCACCTCCATTTAGAGTTGCAGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAGGAAGGAGAGCTCATTGATTTAGGTGTAGAGAACGATATCGTTGATAAATCAGGTGCCTGGTATTCTTATAATG
GAGATAGAATGGGGCAAGGTAAAGAAAACGTCAAAAATTATCTTAAGGAAAATCCACAAATCAAAGAAGAAATTGACCGT
AAGTTACGTGAAAAGTTAGGTATTTTCGATGGTGATGTGGATGAAAATGAAGACGATTCACCAAAAACTTTATTTGATGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.948

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

68.966

100

0.692
  recA Streptococcus pneumoniae TIGR4

65.23

100

0.654
  recA Streptococcus pneumoniae Rx1

65.23

100

0.654
  recA Streptococcus pneumoniae D39

65.23

100

0.654
  recA Streptococcus pneumoniae R6

65.23

100

0.654
  recA Streptococcus pyogenes NZ131

68.693

94.813

0.651
  recA Streptococcus mutans UA159

64.47

100

0.648
  recA Streptococcus mitis NCTC 12261

66.366

95.965

0.637
  recA Neisseria gonorrhoeae MS11

63.401

100

0.634
  recA Neisseria gonorrhoeae strain FA1090

63.401

100

0.634
  recA Neisseria gonorrhoeae MS11

63.401

100

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

97.983

0.634
  recA Streptococcus mitis SK321

66.066

95.965

0.634
  recA Acinetobacter baumannii D1279779

63.218

100

0.634
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.389

0.628
  recA Acinetobacter baylyi ADP1

65.951

93.948

0.62
  recA Helicobacter pylori 26695

64.939

94.524

0.614
  recA Vibrio cholerae strain A1552

65.031

93.948

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.948

0.611
  recA Helicobacter pylori strain NCTC11637

64.634

94.524

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.856

90.202

0.585
  recA Pseudomonas stutzeri DSM 10701

61.963

93.948

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.389

0.579
  recA Glaesserella parasuis strain SC1401

60.494

93.372

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

91.066

0.559