Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QNK10_RS13875 Genome accession   NZ_CP125982
Coordinates   2575228..2576232 (-) Length   334 a.a.
NCBI ID   WP_003229718.1    Uniprot ID   O32055
Organism   Bacillus subtilis strain ZKY05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2570228..2581232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK10_RS13845 (QNK10_13875) yrbG 2571202..2571858 (-) 657 WP_014480436.1 DUF421 domain-containing protein -
  QNK10_RS13850 (QNK10_13880) - 2572056..2572445 (+) 390 WP_014477528.1 TIGR04086 family membrane protein -
  QNK10_RS13855 (QNK10_13885) yajC 2572502..2572768 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  QNK10_RS13860 (QNK10_13890) tgt 2572805..2573950 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  QNK10_RS13865 (QNK10_13895) queA 2573977..2575005 (-) 1029 WP_014477530.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QNK10_RS13870 (QNK10_13900) yrzS 2575035..2575235 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  QNK10_RS13875 (QNK10_13905) ruvB 2575228..2576232 (-) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QNK10_RS13880 (QNK10_13910) ruvA 2576243..2576848 (-) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  QNK10_RS13885 (QNK10_13915) bofC 2576987..2577499 (-) 513 WP_014480438.1 sporulation cell-cell signaling protein BofC -
  QNK10_RS13890 (QNK10_13920) csbX 2577547..2578854 (-) 1308 WP_014480439.1 MFS transporter -
  QNK10_RS13895 (QNK10_13925) iolG 2578925..2579950 (-) 1026 WP_014480440.1 inositol 2-dehydrogenase -
  QNK10_RS13900 (QNK10_13930) yrzF 2580188..2580835 (+) 648 WP_014480441.1 phosphotransferase -
  QNK10_RS13905 (QNK10_13935) - 2580881..2581003 (-) 123 WP_003229707.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37467.78 Da        Isoelectric Point: 5.1631

>NTDB_id=765875 QNK10_RS13875 WP_003229718.1 2575228..2576232(-) (ruvB) [Bacillus subtilis strain ZKY05]
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=765875 QNK10_RS13875 WP_003229718.1 2575228..2576232(-) (ruvB) [Bacillus subtilis strain ZKY05]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACTACGCTTGCTTCGATTGTTGCCAATGAAATGGGAGTGGAG
CTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGTTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGGCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACA
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTCATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGTGATTTCGCCCAAGTGCTGGGTGACAGCAGGATC
ACTGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGATCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATATCAGCTACGATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

57.143

98.503

0.563
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518