Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CF557_RS10810 Genome accession   NZ_CP114281
Coordinates   2277108..2278646 (-) Length   512 a.a.
NCBI ID   WP_094872066.1    Uniprot ID   -
Organism   Gallibacterium anatis strain ESV200     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2272108..2283646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF557_RS10810 (CF557_10810) comM 2277108..2278646 (-) 1539 WP_094872066.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CF557_RS10815 (CF557_10815) lipA 2278791..2279753 (-) 963 WP_039093123.1 lipoyl synthase -
  CF557_RS10820 (CF557_10820) lipB 2279763..2280473 (-) 711 WP_021461956.1 lipoyl(octanoyl) transferase LipB -
  CF557_RS10825 (CF557_10825) ybeD 2280487..2280762 (-) 276 WP_026211015.1 DUF493 family protein YbeD -
  CF557_RS10830 (CF557_10830) - 2280900..2282084 (-) 1185 WP_013746144.1 serine hydrolase -
  CF557_RS10835 (CF557_10835) - 2282107..2282943 (-) 837 WP_018346349.1 septal ring lytic transglycosylase RlpA family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 56102.84 Da        Isoelectric Point: 9.7997

>NTDB_id=765363 CF557_RS10810 WP_094872066.1 2277108..2278646(-) (comM) [Gallibacterium anatis strain ESV200]
MSLAVVYSRASIGVQAPLITIEVHMSNGAPGLTLVGLPETTVKEARDRVRSALINANFVYPTQRITVNLAPADLPKEGGR
FDLPIALGILAASGQIDAKRLQSFEFVGELALTGNLRGVQGVIPAILAANNAKRELIIAKQNAQEATLVANAQTYFATSL
LDVVAFLNQQQKLPIAQQLPPVSHSKNPHLLDMTDIIGQQHAKRALLIAAAGQHNLLFLGPPGTGKTMLASRLTTLLPEM
TEQEAIETAAINSLVQRCVDYQHWKQRPFRSPHHSASMAALVGGGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALREP
LESGEIVISRTAAKVTFPAKFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQQLP
KDENNSEKLKHIVIQARKKQLSRCGKINAHLSGKEIEQYCKLIQDDAIFLENALNKLGLSVRAYHRILRVSRTIADLAGE
EQIQRIHLAEALGYRAMDRLLQRLTANINNAI

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=765363 CF557_RS10810 WP_094872066.1 2277108..2278646(-) (comM) [Gallibacterium anatis strain ESV200]
ATGTCATTAGCAGTTGTTTACAGCCGTGCCTCTATCGGCGTACAAGCACCATTAATCACAATTGAAGTCCATATGAGTAA
CGGCGCACCGGGGTTAACCTTGGTCGGCTTACCGGAAACCACCGTAAAAGAGGCAAGAGATCGTGTCCGCAGTGCCTTAA
TCAATGCTAATTTTGTCTATCCGACACAACGAATCACCGTTAATCTGGCACCGGCGGATCTGCCGAAAGAGGGCGGGCGC
TTTGATCTTCCCATCGCCTTAGGCATTTTGGCGGCTTCCGGGCAAATCGATGCTAAGCGGTTACAATCTTTTGAATTTGT
CGGTGAACTGGCACTTACCGGAAATTTACGTGGCGTACAAGGCGTTATTCCGGCTATTTTGGCGGCGAATAACGCAAAAC
GTGAATTAATTATTGCTAAGCAGAACGCACAAGAAGCAACATTAGTTGCCAATGCTCAAACTTACTTTGCCACCTCATTA
TTGGACGTTGTCGCCTTTCTGAATCAACAACAAAAATTACCGATAGCACAACAATTACCGCCAGTTTCCCATTCTAAAAA
CCCCCATTTACTGGATATGACCGATATTATCGGACAACAACACGCTAAACGAGCTTTACTCATTGCTGCTGCCGGACAGC
ATAATCTCCTCTTTTTAGGGCCACCCGGCACCGGCAAAACAATGCTGGCGAGTCGATTAACAACACTATTGCCAGAGATG
ACAGAACAAGAAGCGATAGAAACGGCTGCCATTAATAGCTTAGTACAACGTTGTGTGGATTATCAGCATTGGAAACAACG
CCCATTCCGCTCACCACATCACAGTGCCTCAATGGCGGCGTTAGTCGGGGGTGGCACTATTCCTAAACCGGGAGAAATTT
CTCTTGCTCATAATGGTGTACTTTTTTTAGATGAATTACCGGAATTTGATCGAAAAGTGCTTGATGCCCTACGAGAACCG
CTGGAAAGTGGCGAAATCGTTATCTCACGTACGGCAGCTAAAGTTACCTTTCCAGCAAAATTTCAACTGATCGCTGCAAT
GAACCCTAGCCCAACAGGGCATTATCAAGGCACACATAACCGCACCTCGCCACAACAGATTATGCGCTACCTTAATCGAT
TATCCGGACCTTTTCTTGACCGATTTGATCTCTCAATTGAAGTGCCATTACTCCCACAAGGTACTTTGCAACAATTACCT
AAAGACGAAAACAACAGTGAAAAATTAAAACATATCGTGATACAGGCGAGGAAAAAACAACTCTCTCGTTGCGGAAAAAT
TAATGCCCATTTATCTGGCAAAGAGATCGAACAATATTGCAAATTAATACAAGATGATGCCATTTTTCTTGAAAATGCAT
TGAATAAGTTGGGGCTTTCTGTTAGAGCCTATCATCGCATTTTACGAGTTTCTCGCACTATCGCCGATCTGGCAGGTGAA
GAACAAATCCAACGCATTCATCTAGCTGAAGCACTAGGTTATCGTGCTATGGATCGATTATTACAGCGTTTAACCGCTAA
TATCAATAACGCCATTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

75.74

99.023

0.75
  comM Glaesserella parasuis strain SC1401

75.296

98.828

0.744
  comM Vibrio cholerae strain A1552

65.415

98.828

0.646
  comM Vibrio campbellii strain DS40M4

64.229

98.828

0.635
  comM Legionella pneumophila str. Paris

51.394

98.047

0.504
  comM Legionella pneumophila strain ERS1305867

51.394

98.047

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.38

99.805

0.463