Detailed information NTG0076532

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: LPC25_RS08390
• Genome accession: NZ_AP025176
• Coordinates: 1725942..1726628 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain TPS5614
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1720942..1731628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPC25_RS08345 (TPS5614TP_16010)	rpmA	1721712..1721996 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
LPC25_RS08350 (TPS5614TP_16020)	-	1722008..1722328 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
LPC25_RS08355 (TPS5614TP_16030)	rplU	1722334..1722642 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
LPC25_RS08360 (TPS5614TP_16040)	mreD	1722878..1723408 (-)	531	WP_001259930.1	rod shape-determining protein MreD	-
LPC25_RS08365 (TPS5614TP_16050)	mreC	1723408..1724250 (-)	843	WP_000911038.1	rod shape-determining protein MreC	-
LPC25_RS08370	-	1724450..1724569 (-)	120	WP_000840602.1	hypothetical protein	-
LPC25_RS08375 (TPS5614TP_16060)	-	1724643..1725116 (-)	474	WP_001236734.1	DUF4930 family protein	-
LPC25_RS08380 (TPS5614TP_16070)	-	1725276..1725473 (+)	198	WP_000025835.1	hypothetical protein	-
LPC25_RS08385 (TPS5614TP_16080)	-	1725590..1725874 (-)	285	WP_000171859.1	hypothetical protein	-
LPC25_RS08390 (TPS5614TP_16090)	ysxA/radC	1725942..1726628 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
LPC25_RS08395 (TPS5614TP_16100)	-	1726625..1727332 (-)	708	WP_000261107.1	prepilin peptidase	-
LPC25_RS08400 (TPS5614TP_16110)	-	1727602..1728873 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
LPC25_RS08405 (TPS5614TP_16120)	-	1728886..1731516 (-)	2631	WP_000425346.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=76532 LPC25_RS08390 WP_000692886.1 1725942..1726628(-) (ysxA/radC) [Staphylococcus aureus strain TPS5614]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=76532 LPC25_RS08390 WP_000692886.1 1725942..1726628(-) (ysxA/radC) [Staphylococcus aureus strain TPS5614]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377