Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   O1449_RS14295 Genome accession   NZ_CP114264
Coordinates   2977503..2979671 (-) Length   722 a.a.
NCBI ID   WP_269229437.1    Uniprot ID   A0A9E9L2S7
Organism   Acinetobacter sp. TR3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2972503..2984671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS14280 (O1449_14295) - 2974933..2975799 (-) 867 WP_269238644.1 hypothetical protein -
  O1449_RS14285 (O1449_14300) aroB 2975819..2976901 (-) 1083 WP_269238645.1 3-dehydroquinate synthase -
  O1449_RS14290 (O1449_14305) aroK 2976926..2977492 (-) 567 WP_087535970.1 shikimate kinase AroK -
  O1449_RS14295 (O1449_14310) pilQ 2977503..2979671 (-) 2169 WP_269229437.1 type IV pilus secretin PilQ Machinery gene
  O1449_RS14300 (O1449_14315) pilP 2979688..2980215 (-) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  O1449_RS14305 (O1449_14320) comO 2980215..2980958 (-) 744 WP_269238646.1 type 4a pilus biogenesis protein PilO Machinery gene
  O1449_RS14310 (O1449_14325) pilN 2980955..2981596 (-) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  O1449_RS14315 (O1449_14330) comM 2981596..2982654 (-) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 78827.74 Da        Isoelectric Point: 8.7958

>NTDB_id=765311 O1449_RS14295 WP_269229437.1 2977503..2979671(-) (pilQ) [Acinetobacter sp. TR3]
MKKQLKSSLFGEVKTMNHAFRQFSMGVVAIAIMQAASAQVSMTNIVPMSLADQGTEIRIMFNGLPPQPQAYQLEQPSRLI
LDFDKTQQNLKQASIPVSTNEASTIDVAADDQRSRLVVNLKEAGAFTTRVEGNTFILKINAVQPVNAARNATVVRKPQQG
VSNIGFQRGAQGEGLVVVDLLGSNTPVDVQQQGSKIVIRTMGNKIPTHLARRLNTNDFATPVASVDAYNDKGNGVITIQS
AGSYEYMAYQAENKLTISLKRPEDKSSPKAKAQVYTGNKISLDFQDIEVRRVLQLLADFTSINMVAADTVQGNITLRLKD
VPWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKSEEEEAKAIAQSIKLAPIQTEYIKLSYAKAADILKLIEDSRDNKA
ASSNRTTNSDSLALESLLSSRGSAVADTRTNTLIVNDAAVNIDKIRKLIDLLDVSVKQVMIEARIVSASTDFTKEMGVKW
GILSQGITSNNDLLVGGSDTTLWNLRKPTKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAV
QADGYGEVISTPKVMTADKQSAKISSGKRIPYATSSGNDGPKTEFVDAVLSLDVTPSITPEGKVMLKLNITKDSQSNPTP
TGQLTINKNEINTNVLVDNGETVVLGGIFEQENINSQTKVPFLGDLPYLGKFFRNDRKTDTKRELLIFVTPRIVNDTLTR
NH

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=765311 O1449_RS14295 WP_269229437.1 2977503..2979671(-) (pilQ) [Acinetobacter sp. TR3]
ATGAAAAAGCAGTTAAAAAGTTCTTTATTTGGGGAAGTCAAGACCATGAATCATGCATTCCGTCAATTTTCAATGGGTGT
AGTGGCTATTGCAATTATGCAAGCTGCATCTGCACAAGTGAGTATGACGAATATTGTTCCAATGAGTTTGGCTGATCAAG
GTACAGAAATTCGTATCATGTTTAACGGTTTGCCTCCACAGCCACAGGCGTATCAACTAGAACAACCTTCTCGATTGATT
TTAGATTTTGATAAAACGCAACAAAATTTGAAACAGGCATCAATACCAGTTTCAACTAATGAAGCATCAACAATTGATGT
TGCAGCTGATGATCAGCGTTCACGTCTGGTTGTTAATTTAAAGGAAGCAGGAGCTTTTACGACACGCGTTGAAGGGAATA
CGTTTATTCTTAAAATAAATGCAGTTCAACCAGTAAATGCTGCTCGTAATGCTACGGTTGTCAGAAAACCACAGCAAGGT
GTATCAAATATTGGTTTCCAGCGCGGTGCTCAAGGTGAAGGATTAGTTGTTGTTGATCTATTGGGTAGTAACACTCCCGT
AGATGTGCAGCAACAGGGAAGTAAAATTGTTATTAGAACGATGGGAAATAAAATTCCAACGCATTTAGCTCGTCGTTTAA
ATACCAACGATTTTGCTACACCTGTCGCAAGTGTAGATGCTTATAATGATAAAGGGAATGGTGTTATCACCATTCAGTCT
GCTGGTAGTTATGAGTATATGGCTTACCAAGCGGAAAATAAATTAACGATTAGTCTGAAGCGTCCAGAAGATAAGTCTTC
TCCGAAAGCTAAAGCCCAGGTCTATACTGGGAATAAAATTTCATTAGATTTTCAAGATATTGAGGTGCGTCGAGTTCTGC
AGCTGTTGGCTGATTTTACCAGTATAAATATGGTTGCAGCTGATACTGTACAAGGGAACATTACTTTACGCCTTAAGGAT
GTACCATGGGATCAAGCTTTAGATATTGTGCTTAAAACAAAGAATTTAGATAAACGCCGAAATGGAAACGTAATCTGGAT
TGCACCAGTTTCTGAACTAATTAAGTCAGAAGAAGAGGAAGCTAAAGCAATCGCACAAAGCATTAAACTGGCTCCAATTC
AAACAGAATATATTAAACTAAGTTATGCAAAAGCTGCGGATATTTTAAAACTTATAGAGGACTCTCGCGATAATAAAGCG
GCGAGTTCAAACCGAACAACTAATTCAGATTCTTTAGCTTTAGAAAGCTTATTGAGCTCACGCGGGAGTGCTGTCGCAGA
TACACGTACAAATACTTTAATTGTTAATGATGCTGCCGTAAATATAGATAAAATTCGTAAATTAATTGATTTATTAGATG
TTTCAGTAAAACAGGTTATGATTGAAGCACGAATTGTGAGTGCGAGTACTGATTTTACAAAAGAAATGGGTGTTAAGTGG
GGTATTTTATCTCAGGGCATTACTAGCAATAACGATTTATTAGTTGGTGGTAGTGATACTACTTTATGGAACTTAAGAAA
GCCTACTAAAGATAGTGACACTGGTGGTTGGAAATATGAGATCGAACGCCCGGATAACTTGAATGTAGATTTGGGGGCTG
TAACACCTGGTGCAAGCCGGATTGCATTCGGTTTGATTAGTTTATCTGATTTTATGTTGGATTTGGAGTTGTCAGCAGTT
CAAGCTGATGGCTATGGTGAAGTGATATCTACGCCAAAAGTTATGACAGCTGATAAGCAGTCAGCTAAAATTTCATCTGG
TAAACGTATCCCTTATGCAACATCTAGTGGGAATGATGGACCAAAAACTGAATTTGTTGATGCGGTATTGAGTTTAGATG
TAACACCTAGTATTACCCCAGAAGGTAAAGTTATGTTGAAGCTGAATATTACTAAAGACTCGCAGAGTAACCCTACTCCA
ACAGGTCAATTGACCATTAATAAAAATGAAATAAATACTAATGTATTGGTCGATAATGGTGAAACGGTTGTGTTAGGTGG
TATTTTTGAACAAGAAAATATTAACTCGCAAACTAAAGTCCCTTTTTTAGGCGATTTACCTTATTTGGGTAAGTTTTTCC
GAAATGATAGAAAGACTGATACGAAACGCGAATTACTTATTTTTGTGACACCAAGAATTGTTAATGACACTTTGACGAGA
AATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-458)

AMIN domain (AMIN)

(52-136)

Secretin and TonB N terminus short domain (STN)

(307-349)

Bacterial type II and III secretion system protein (Secretin)

(559-714)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.309

100

0.745
  pilQ Acinetobacter baumannii strain A118

74.171

100

0.744
  comQ Acinetobacter baylyi ADP1

70.153

99.307

0.697
  pilQ Pseudomonas aeruginosa PAK

40.276

100

0.404