Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   O1449_RS14305 Genome accession   NZ_CP114264
Coordinates   2980215..2980958 (-) Length   247 a.a.
NCBI ID   WP_269238646.1    Uniprot ID   A0A9E9L2T9
Organism   Acinetobacter sp. TR3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2975215..2985958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS14285 (O1449_14300) aroB 2975819..2976901 (-) 1083 WP_269238645.1 3-dehydroquinate synthase -
  O1449_RS14290 (O1449_14305) aroK 2976926..2977492 (-) 567 WP_087535970.1 shikimate kinase AroK -
  O1449_RS14295 (O1449_14310) pilQ 2977503..2979671 (-) 2169 WP_269229437.1 type IV pilus secretin PilQ Machinery gene
  O1449_RS14300 (O1449_14315) pilP 2979688..2980215 (-) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  O1449_RS14305 (O1449_14320) comO 2980215..2980958 (-) 744 WP_269238646.1 type 4a pilus biogenesis protein PilO Machinery gene
  O1449_RS14310 (O1449_14325) pilN 2980955..2981596 (-) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  O1449_RS14315 (O1449_14330) comM 2981596..2982654 (-) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  O1449_RS14320 (O1449_14335) ponA 2982817..2985387 (+) 2571 WP_269238647.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28178.86 Da        Isoelectric Point: 4.5442

>NTDB_id=765313 O1449_RS14305 WP_269238646.1 2980215..2980958(-) (comO) [Acinetobacter sp. TR3]
MSQEDLNEFDQEIVASKKKKMTLEQFFQQFNTLDMNNYGGWPLSVKITCWIFVFLAVLALGYFVVIRGQLDGIANAQAQE
QSLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIEATGDYHAFGAFVTGIAALPRIVTLHDFIVEAQQDSQKKSDIPVINYSIKAKTYRYISPEEQVEKESMTQPATTTTP
SVQGGQH

Nucleotide


Download         Length: 744 bp        

>NTDB_id=765313 O1449_RS14305 WP_269238646.1 2980215..2980958(-) (comO) [Acinetobacter sp. TR3]
ATGAGCCAAGAAGATTTAAACGAATTTGATCAAGAGATTGTTGCTTCGAAAAAGAAAAAAATGACATTAGAGCAATTTTT
TCAACAATTCAATACATTGGATATGAATAATTATGGAGGGTGGCCACTTTCTGTAAAAATTACCTGTTGGATTTTTGTTT
TTTTGGCAGTGCTCGCTCTAGGGTATTTTGTCGTAATTAGAGGTCAACTTGATGGTATTGCAAATGCTCAAGCACAAGAG
CAAAGTTTGTTAAATGAGTTTAGGGAAAAAGACTCTAAATTACGTAATTTGCAACAATATCAAGCCCAATTACAAGAAAT
GGAGGCGAATTTTAATCAGCAACTTGAACAATTGCCGAAAGAAACTGAAATTCCAAGTTTAGTTGAGGATATTAATTTAA
CTGGTGTGAACTCTGGATTAAAGTTTAAAAATATCCGCTTAGAAAATGAAGTAAAGCAAGAGTTTTTTATTGAACAGCCA
ATTAGTATTGAAGCAACTGGTGATTATCATGCGTTTGGTGCTTTTGTAACAGGGATTGCTGCGTTACCTAGGATTGTGAC
ATTGCATGATTTTATCGTTGAGGCGCAGCAAGATTCTCAGAAAAAATCAGATATCCCTGTGATTAATTACTCAATTAAAG
CAAAAACATATCGTTATATTAGTCCTGAAGAGCAAGTTGAGAAAGAATCTATGACTCAACCAGCTACAACGACAACTCCA
TCAGTTCAAGGAGGTCAGCACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

72.245

99.19

0.717
  pilO Acinetobacter baumannii D1279779

73.64

96.761

0.713