Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   O1450_RS01410 Genome accession   NZ_CP114256
Coordinates   308492..309241 (+) Length   249 a.a.
NCBI ID   WP_269229436.1    Uniprot ID   -
Organism   Acinetobacter sp. TR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303492..314241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS01395 (O1450_01395) ponA 304063..306633 (-) 2571 WP_269229434.1 penicillin-binding protein PBP1a -
  O1450_RS01400 (O1450_01400) comM 306796..307854 (+) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  O1450_RS01405 (O1450_01405) pilN 307854..308495 (+) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  O1450_RS01410 (O1450_01410) comO 308492..309241 (+) 750 WP_269229436.1 type 4a pilus biogenesis protein PilO Machinery gene
  O1450_RS01415 (O1450_01415) pilP 309241..309768 (+) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  O1450_RS01420 (O1450_01420) pilQ 309785..311953 (+) 2169 WP_269229437.1 type IV pilus secretin PilQ Machinery gene
  O1450_RS01425 (O1450_01425) aroK 311964..312530 (+) 567 WP_087535970.1 shikimate kinase AroK -
  O1450_RS01430 (O1450_01430) aroB 312555..313637 (+) 1083 WP_269229438.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28254.79 Da        Isoelectric Point: 4.4643

>NTDB_id=765239 O1450_RS01410 WP_269229436.1 308492..309241(+) (comO) [Acinetobacter sp. TR11]
MSQEDLNEFDQEIVASKKKKMTLEQFFQQFNTLDMNNYGGWPLSVKITCWIFVFLAVLALGYFVVIRGQLDGIANAQAQE
QSLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIEATGDYHAFGAFVTGIAALPRIVTLHDFIVEAQQDSQKKSDIPVINYSIKAKTYRYIGSDEQPGFSGEQDNTSAMNQ
APSVQGGQH

Nucleotide


Download         Length: 750 bp        

>NTDB_id=765239 O1450_RS01410 WP_269229436.1 308492..309241(+) (comO) [Acinetobacter sp. TR11]
ATGAGCCAAGAAGATTTAAACGAATTTGATCAAGAGATTGTTGCTTCGAAAAAGAAAAAAATGACATTAGAGCAATTTTT
TCAACAATTCAATACATTGGATATGAATAATTATGGAGGGTGGCCACTTTCTGTAAAAATTACCTGTTGGATTTTTGTTT
TTTTGGCAGTGCTCGCTCTAGGGTATTTTGTCGTAATTAGAGGTCAACTTGATGGTATTGCAAATGCTCAAGCACAAGAG
CAAAGTTTGTTAAATGAGTTTAGGGAAAAAGACTCTAAATTACGTAATTTGCAACAATATCAAGCCCAATTACAAGAAAT
GGAAGCGAATTTTAATCAGCAACTTGAACAATTGCCGAAAGAAACTGAAATTCCAAGTTTAGTTGAAGATATTAATTTAA
CTGGTGTGAACTCTGGATTAAAGTTTAAAAATATCCGCTTAGAAAATGAAGTAAAGCAAGAGTTTTTTATTGAACAGCCA
ATTAGTATTGAAGCAACTGGTGATTATCATGCGTTTGGTGCTTTTGTAACAGGGATTGCTGCGTTACCTAGGATTGTGAC
ATTGCATGATTTTATCGTTGAGGCGCAGCAAGATTCTCAGAAAAAATCAGATATCCCTGTGATTAATTACTCAATTAAGG
CAAAAACTTATCGATACATTGGTTCTGACGAGCAACCAGGGTTTAGTGGTGAGCAGGATAATACATCTGCTATGAATCAG
GCTCCATCAGTTCAAGGAGGTCAGCACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

73.279

99.197

0.727
  pilO Acinetobacter baumannii D1279779

74.684

95.181

0.711