Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   O1450_RS01420 Genome accession   NZ_CP114256
Coordinates   309785..311953 (+) Length   722 a.a.
NCBI ID   WP_269229437.1    Uniprot ID   A0A9E9L2S7
Organism   Acinetobacter sp. TR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304785..316953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS01400 (O1450_01400) comM 306796..307854 (+) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  O1450_RS01405 (O1450_01405) pilN 307854..308495 (+) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  O1450_RS01410 (O1450_01410) comO 308492..309241 (+) 750 WP_269229436.1 type 4a pilus biogenesis protein PilO Machinery gene
  O1450_RS01415 (O1450_01415) pilP 309241..309768 (+) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  O1450_RS01420 (O1450_01420) pilQ 309785..311953 (+) 2169 WP_269229437.1 type IV pilus secretin PilQ Machinery gene
  O1450_RS01425 (O1450_01425) aroK 311964..312530 (+) 567 WP_087535970.1 shikimate kinase AroK -
  O1450_RS01430 (O1450_01430) aroB 312555..313637 (+) 1083 WP_269229438.1 3-dehydroquinate synthase -
  O1450_RS01435 (O1450_01435) - 313657..314523 (+) 867 WP_269229439.1 hypothetical protein -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 78827.74 Da        Isoelectric Point: 8.7958

>NTDB_id=765241 O1450_RS01420 WP_269229437.1 309785..311953(+) (pilQ) [Acinetobacter sp. TR11]
MKKQLKSSLFGEVKTMNHAFRQFSMGVVAIAIMQAASAQVSMTNIVPMSLADQGTEIRIMFNGLPPQPQAYQLEQPSRLI
LDFDKTQQNLKQASIPVSTNEASTIDVAADDQRSRLVVNLKEAGAFTTRVEGNTFILKINAVQPVNAARNATVVRKPQQG
VSNIGFQRGAQGEGLVVVDLLGSNTPVDVQQQGSKIVIRTMGNKIPTHLARRLNTNDFATPVASVDAYNDKGNGVITIQS
AGSYEYMAYQAENKLTISLKRPEDKSSPKAKAQVYTGNKISLDFQDIEVRRVLQLLADFTSINMVAADTVQGNITLRLKD
VPWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKSEEEEAKAIAQSIKLAPIQTEYIKLSYAKAADILKLIEDSRDNKA
ASSNRTTNSDSLALESLLSSRGSAVADTRTNTLIVNDAAVNIDKIRKLIDLLDVSVKQVMIEARIVSASTDFTKEMGVKW
GILSQGITSNNDLLVGGSDTTLWNLRKPTKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAV
QADGYGEVISTPKVMTADKQSAKISSGKRIPYATSSGNDGPKTEFVDAVLSLDVTPSITPEGKVMLKLNITKDSQSNPTP
TGQLTINKNEINTNVLVDNGETVVLGGIFEQENINSQTKVPFLGDLPYLGKFFRNDRKTDTKRELLIFVTPRIVNDTLTR
NH

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=765241 O1450_RS01420 WP_269229437.1 309785..311953(+) (pilQ) [Acinetobacter sp. TR11]
ATGAAAAAGCAGTTAAAAAGTTCTTTATTTGGGGAAGTCAAGACCATGAATCATGCATTCCGTCAATTTTCAATGGGTGT
AGTGGCTATTGCAATTATGCAAGCTGCATCTGCACAAGTGAGTATGACGAATATTGTTCCAATGAGTTTGGCTGATCAAG
GTACAGAAATTCGTATCATGTTTAACGGTTTGCCTCCACAGCCACAAGCGTATCAACTAGAACAACCTTCTCGATTGATT
TTAGATTTTGATAAAACGCAACAAAATTTGAAACAGGCATCAATACCAGTTTCAACTAATGAAGCATCAACAATTGATGT
TGCAGCTGATGATCAGCGTTCACGTCTGGTTGTTAATTTAAAGGAAGCAGGAGCTTTTACGACACGTGTTGAAGGGAATA
CGTTTATTCTTAAAATAAATGCAGTTCAACCAGTAAATGCTGCTCGTAATGCTACGGTTGTCAGAAAACCACAGCAAGGT
GTATCAAATATTGGTTTCCAGCGCGGTGCTCAAGGTGAAGGATTAGTTGTTGTTGATCTATTGGGTAGTAACACTCCCGT
AGATGTGCAGCAACAGGGAAGTAAAATTGTTATTAGAACGATGGGAAATAAAATTCCAACGCATTTAGCTCGTCGTTTAA
ATACCAACGATTTTGCTACACCTGTCGCAAGTGTAGATGCTTATAATGATAAAGGGAATGGTGTTATCACCATTCAGTCT
GCTGGTAGTTATGAGTATATGGCTTACCAAGCGGAAAATAAATTAACGATTAGTCTGAAGCGTCCAGAAGATAAGTCTTC
TCCGAAAGCTAAAGCCCAGGTCTATACTGGGAATAAAATTTCATTAGATTTTCAAGATATTGAGGTGCGTCGAGTTCTGC
AGCTGTTGGCTGATTTTACCAGTATAAATATGGTTGCAGCTGATACTGTACAAGGGAACATTACTTTACGCCTTAAGGAT
GTACCATGGGATCAAGCTTTAGATATTGTGCTTAAAACAAAGAATTTAGATAAACGCCGAAATGGAAACGTAATCTGGAT
TGCACCAGTTTCTGAATTAATTAAGTCAGAAGAAGAGGAAGCTAAAGCAATCGCACAAAGCATTAAACTGGCTCCAATTC
AAACAGAATATATTAAATTAAGTTATGCAAAAGCTGCGGATATTTTAAAACTTATAGAGGACTCTCGCGATAATAAAGCG
GCGAGTTCAAACCGAACAACTAATTCAGATTCTTTAGCTTTAGAAAGCTTATTGAGCTCACGCGGGAGTGCTGTCGCAGA
TACACGTACAAATACTTTAATTGTTAATGATGCTGCCGTAAATATAGATAAAATTCGTAAATTAATTGATTTATTAGATG
TTTCAGTAAAACAGGTTATGATTGAAGCACGAATTGTGAGTGCGAGTACTGATTTTACAAAAGAAATGGGTGTTAAGTGG
GGTATTTTATCTCAGGGCATTACTAGCAATAACGATTTATTAGTTGGTGGTAGTGATACTACTTTATGGAACTTAAGAAA
GCCTACTAAAGATAGTGACACTGGTGGTTGGAAATATGAGATCGAACGCCCGGATAACTTGAATGTAGATTTGGGGGCTG
TAACACCTGGTGCAAGCCGGATTGCATTCGGTTTGATTAGTTTATCTGATTTTATGTTGGATTTGGAGTTGTCAGCAGTT
CAAGCTGATGGCTATGGTGAAGTGATATCTACGCCAAAAGTTATGACAGCTGATAAGCAGTCAGCTAAAATTTCATCTGG
TAAACGTATCCCTTATGCAACATCTAGTGGGAATGATGGACCAAAAACTGAATTTGTTGATGCGGTATTGAGTTTAGATG
TAACACCTAGTATTACCCCAGAAGGTAAAGTTATGTTGAAGCTGAATATTACTAAAGACTCGCAGAGTAACCCTACTCCA
ACAGGTCAATTGACCATTAATAAAAATGAAATAAATACTAATGTATTGGTCGATAATGGTGAAACGGTTGTGTTAGGTGG
TATTTTTGAACAAGAAAATATTAACTCGCAAACTAAAGTCCCTTTTTTAGGCGATTTACCTTATTTGGGTAAGTTTTTCC
GAAATGATAGAAAGACTGATACGAAACGCGAATTACTTATTTTTGTGACACCAAGAATTGTTAATGACACTTTGACGAGA
AATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-458)

AMIN domain (AMIN)

(52-136)

Secretin and TonB N terminus short domain (STN)

(307-349)

Bacterial type II and III secretion system protein (Secretin)

(559-714)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.309

100

0.745
  pilQ Acinetobacter baumannii strain A118

74.171

100

0.744
  comQ Acinetobacter baylyi ADP1

70.153

99.307

0.697
  pilQ Pseudomonas aeruginosa PAK

40.276

100

0.404