Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   O1450_RS01405 Genome accession   NZ_CP114256
Coordinates   307854..308495 (+) Length   213 a.a.
NCBI ID   WP_269229435.1    Uniprot ID   A0A9E9L2E9
Organism   Acinetobacter sp. TR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302854..313495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS01390 (O1450_01390) - 303225..304043 (+) 819 WP_269229433.1 methyltransferase domain-containing protein -
  O1450_RS01395 (O1450_01395) ponA 304063..306633 (-) 2571 WP_269229434.1 penicillin-binding protein PBP1a -
  O1450_RS01400 (O1450_01400) comM 306796..307854 (+) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  O1450_RS01405 (O1450_01405) pilN 307854..308495 (+) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  O1450_RS01410 (O1450_01410) comO 308492..309241 (+) 750 WP_269229436.1 type 4a pilus biogenesis protein PilO Machinery gene
  O1450_RS01415 (O1450_01415) pilP 309241..309768 (+) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  O1450_RS01420 (O1450_01420) pilQ 309785..311953 (+) 2169 WP_269229437.1 type IV pilus secretin PilQ Machinery gene
  O1450_RS01425 (O1450_01425) aroK 311964..312530 (+) 567 WP_087535970.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23739.10 Da        Isoelectric Point: 6.0091

>NTDB_id=765238 O1450_RS01405 WP_269229435.1 307854..308495(+) (pilN) [Acinetobacter sp. TR11]
MAKINLLPWRDELREQKKKQFVAFCAGVAALGVVSVFSGWMYFDHKLNDQEQANQLIVSTNQNLDTQLKSLDGLQERRNA
IIERMKLIQGLQGQRPITVRLVDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
ADDKKDKTASSLVPRVEENYGSFVVTVDLGEIGTTAEADPTLEAVASGSGVVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=765238 O1450_RS01405 WP_269229435.1 307854..308495(+) (pilN) [Acinetobacter sp. TR11]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAAAAAGAAACAGTTCGTTGCATTTTGTGCTGG
GGTAGCAGCATTAGGCGTAGTATCAGTTTTCTCTGGGTGGATGTACTTTGATCATAAGTTGAATGATCAAGAACAGGCAA
ATCAGCTAATTGTAAGTACTAACCAGAATTTAGATACTCAACTTAAGTCATTAGATGGTTTGCAAGAACGACGTAATGCA
ATCATTGAGCGTATGAAACTAATTCAAGGATTGCAGGGGCAGCGTCCAATTACAGTACGTTTAGTTGATGAGCTAGTACG
AGTAACACCACCTACAATGTATTTGACAAAATTTACCCGTACAGGTGATAAATTTACCATTGAGGGTAAGGCAGAAAGCC
CAAATACCGTTGCTGAGCTTTTAAGAAATCTAGAAGCTTCACCTTGGTATCGTAACGCGTTTATGAATTCTTTTTTAGCG
GCAGATGATAAAAAAGATAAAACAGCAAGCTCTTTAGTTCCTCGAGTTGAAGAAAACTATGGAAGTTTTGTGGTAACTGT
TGATTTGGGAGAAATAGGCACAACAGCTGAGGCTGACCCAACTTTAGAAGCAGTTGCATCAGGATCAGGGGTAGTGAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.056

100

0.761
  comN Acinetobacter baylyi ADP1

78.462

91.549

0.718