Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   O1450_RS01415 Genome accession   NZ_CP114256
Coordinates   309241..309768 (+) Length   175 a.a.
NCBI ID   WP_241306541.1    Uniprot ID   A0A9E9L4U0
Organism   Acinetobacter sp. TR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304241..314768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS01400 (O1450_01400) comM 306796..307854 (+) 1059 WP_004660139.1 pilus assembly protein PilM Machinery gene
  O1450_RS01405 (O1450_01405) pilN 307854..308495 (+) 642 WP_269229435.1 PilN domain-containing protein Machinery gene
  O1450_RS01410 (O1450_01410) comO 308492..309241 (+) 750 WP_269229436.1 type 4a pilus biogenesis protein PilO Machinery gene
  O1450_RS01415 (O1450_01415) pilP 309241..309768 (+) 528 WP_241306541.1 pilus assembly protein PilP Machinery gene
  O1450_RS01420 (O1450_01420) pilQ 309785..311953 (+) 2169 WP_269229437.1 type IV pilus secretin PilQ Machinery gene
  O1450_RS01425 (O1450_01425) aroK 311964..312530 (+) 567 WP_087535970.1 shikimate kinase AroK -
  O1450_RS01430 (O1450_01430) aroB 312555..313637 (+) 1083 WP_269229438.1 3-dehydroquinate synthase -
  O1450_RS01435 (O1450_01435) - 313657..314523 (+) 867 WP_269229439.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19259.43 Da        Isoelectric Point: 8.4537

>NTDB_id=765240 O1450_RS01415 WP_241306541.1 309241..309768(+) (pilP) [Acinetobacter sp. TR11]
MTSYKLLCGLLISLVLVGCDSRIDAVNQQMADIRNQQPLPIEPAPVFAPVPLFNYASHQLKSPFMPSSLAAELKIMAGKR
VYPNLNRQSQPLESYALEALNMKGSMRGKQNDTIALIQTPDGQIERVQVGSYLGMNQGRIVKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPVS

Nucleotide


Download         Length: 528 bp        

>NTDB_id=765240 O1450_RS01415 WP_241306541.1 309241..309768(+) (pilP) [Acinetobacter sp. TR11]
ATGACTAGTTATAAATTATTGTGCGGTCTATTGATTAGTCTCGTTTTAGTTGGATGTGATTCTCGTATAGATGCTGTAAA
TCAACAGATGGCTGATATTCGTAATCAACAACCGTTACCTATCGAACCTGCTCCTGTATTTGCTCCAGTACCATTATTTA
ATTACGCATCGCACCAGTTGAAAAGTCCGTTTATGCCAAGTTCATTAGCTGCTGAATTAAAAATTATGGCTGGTAAGCGT
GTTTATCCTAACCTTAACCGGCAGTCACAACCTTTAGAGAGTTATGCTCTTGAGGCCTTGAATATGAAAGGTAGTATGCG
TGGTAAGCAAAATGACACGATCGCCTTGATTCAAACACCAGATGGTCAGATTGAGCGTGTACAGGTTGGTAGTTATTTGG
GTATGAACCAAGGGCGTATTGTAAAAATTAGCCCAACACAAATTGATTTAGTTGAAATTGTGCCAGATGGGCGAGAAGGT
TATGTTGAGAGACCGCGTACGCTCGTTTTAATTGGTCCGGTATCGTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

80.925

98.857

0.8
  comL Acinetobacter baylyi ADP1

70.52

98.857

0.697