Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   QM339_RS09910 Genome accession   NZ_CP125899
Coordinates   2001684..2002397 (+) Length   237 a.a.
NCBI ID   WP_283502244.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1996684..2007397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM339_RS09850 (QM339_09850) - 1997886..1998149 (-) 264 WP_001205732.1 hypothetical protein -
  QM339_RS09855 (QM339_09855) - 1998158..1998418 (-) 261 WP_000291510.1 DUF1108 family protein -
  QM339_RS09860 (QM339_09860) - 1998423..1998725 (-) 303 WP_000165371.1 DUF2482 family protein -
  QM339_RS09865 (QM339_09865) - 1998820..1998981 (-) 162 WP_161386943.1 DUF1270 family protein -
  QM339_RS09870 (QM339_09870) - 1998978..1999301 (-) 324 WP_001120201.1 DUF771 domain-containing protein -
  QM339_RS09875 (QM339_09875) - 1999356..1999736 (+) 381 WP_000762519.1 DUF2513 domain-containing protein -
  QM339_RS09880 (QM339_09880) - 1999723..1999920 (-) 198 WP_001148862.1 hypothetical protein -
  QM339_RS09885 (QM339_09885) - 1999936..2000688 (-) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  QM339_RS09890 (QM339_09890) - 2000739..2001068 (+) 330 WP_000128907.1 hypothetical protein -
  QM339_RS09895 (QM339_09895) - 2001057..2001272 (-) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  QM339_RS09900 (QM339_09900) - 2001306..2001551 (-) 246 WP_043859301.1 helix-turn-helix transcriptional regulator -
  QM339_RS09905 (QM339_09905) - 2001548..2001721 (-) 174 WP_031908048.1 hypothetical protein -
  QM339_RS09910 (QM339_09910) irvR 2001684..2002397 (+) 714 WP_283502244.1 XRE family transcriptional regulator Regulator
  QM339_RS09915 (QM339_09915) - 2002413..2003345 (+) 933 WP_000759682.1 exonuclease domain-containing protein -
  QM339_RS09920 (QM339_09920) - 2003351..2003692 (+) 342 WP_000591749.1 hypothetical protein -
  QM339_RS09925 (QM339_09925) - 2003896..2004078 (+) 183 WP_000705248.1 hypothetical protein -
  QM339_RS09930 (QM339_09930) - 2004178..2004642 (+) 465 WP_000825947.1 hypothetical protein -
  QM339_RS09935 (QM339_09935) - 2004701..2005738 (+) 1038 WP_000857191.1 site-specific integrase -
  QM339_RS09940 (QM339_09940) sph 2005789..2006619 (+) 831 Protein_1921 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27033.62 Da        Isoelectric Point: 5.0545

>NTDB_id=765240 QM339_RS09910 WP_283502244.1 2001684..2002397(+) (irvR) [Staphylococcus aureus strain CHAL3]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTLVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=765240 QM339_RS09910 WP_283502244.1 2001684..2002397(+) (irvR) [Staphylococcus aureus strain CHAL3]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCTAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401