Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O1Q77_RS19495 Genome accession   NZ_CP114182
Coordinates   4286584..4288098 (+) Length   504 a.a.
NCBI ID   WP_304520342.1    Uniprot ID   -
Organism   Aeromonas veronii strain AS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4281584..4293098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q77_RS19480 (O1Q77_19485) - 4283321..4284265 (-) 945 WP_265774280.1 branched-chain amino acid transaminase -
  O1Q77_RS19485 (O1Q77_19490) ilvM 4284278..4284556 (-) 279 WP_005339613.1 acetolactate synthase 2 small subunit -
  O1Q77_RS19490 (O1Q77_19495) ilvG 4284553..4286199 (-) 1647 WP_279489917.1 acetolactate synthase 2 catalytic subunit -
  O1Q77_RS19495 (O1Q77_19500) comM 4286584..4288098 (+) 1515 WP_304520342.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O1Q77_RS19500 (O1Q77_19505) - 4288225..4289124 (+) 900 WP_304520343.1 acyltransferase -
  O1Q77_RS19505 (O1Q77_19510) - 4289131..4290096 (+) 966 WP_058056256.1 acyltransferase -
  O1Q77_RS19510 (O1Q77_19515) - 4290021..4290527 (-) 507 WP_304520344.1 DUF523 domain-containing protein -
  O1Q77_RS19515 (O1Q77_19520) - 4290524..4291174 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  O1Q77_RS19520 (O1Q77_19525) - 4291249..4291884 (+) 636 WP_042055347.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54562.49 Da        Isoelectric Point: 7.6884

>NTDB_id=764853 O1Q77_RS19495 WP_304520342.1 4286584..4288098(+) (comM) [Aeromonas veronii strain AS1]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPAPQSAENLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFIDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=764853 O1Q77_RS19495 WP_304520342.1 4286584..4288098(+) (comM) [Aeromonas veronii strain AS1]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGTGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAGTTTTT
AGGGGAATTGGCCCTGACCGGAGAGATTCGCCCTGTGCTCGGGGTGCTGCCTGCCGTACTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCCGAAGCGTCCCTCATTCAGGATGCCGAAGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCCCTGCCGGCCCCCCAAAGCGCGGAGAACCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACACCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGTCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTATCGACCGCTTTGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCACGGGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAATCT
GCTTGATAGCCGCGAGATTGAGGATATTTGCCGACTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.595

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.595

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462