Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R82_RS24280 Genome accession   NZ_AP022055
Coordinates   5267936..5269423 (+) Length   495 a.a.
NCBI ID   WP_102081142.1    Uniprot ID   -
Organism   Pseudomonas putida strain WP4-W18-CRE-03     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5262936..5274423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R82_RS24255 (WP4W18C03_47620) - 5263827..5264522 (+) 696 WP_043213427.1 HAD family hydrolase -
  H7R82_RS24260 (WP4W18C03_47630) sutA 5264608..5264934 (-) 327 WP_043213429.1 transcriptional regulator SutA -
  H7R82_RS24265 (WP4W18C03_47640) - 5265392..5266723 (-) 1332 WP_043213430.1 ammonium transporter -
  H7R82_RS24270 (WP4W18C03_47650) glnK 5266766..5267104 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  H7R82_RS24275 (WP4W18C03_47660) - 5267492..5267755 (+) 264 WP_043213432.1 accessory factor UbiK family protein -
  H7R82_RS24280 (WP4W18C03_47670) comM 5267936..5269423 (+) 1488 WP_102081142.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R82_RS24285 (WP4W18C03_47680) - 5269588..5271375 (+) 1788 WP_043213436.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  H7R82_RS24290 (WP4W18C03_47690) - 5271528..5272439 (+) 912 WP_043213439.1 LysR substrate-binding domain-containing protein -
  H7R82_RS24295 (WP4W18C03_47700) - 5272535..5274376 (-) 1842 WP_182943387.1 amidohydrolase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53066.91 Da        Isoelectric Point: 7.6770

>NTDB_id=76439 H7R82_RS24280 WP_102081142.1 5267936..5269423(+) (comM) [Pseudomonas putida strain WP4-W18-CRE-03]
MSLALVHSRAQVGVLAPAVSVETHLANGLPTLTLVGLPEATVKESKDRVRSAIVNSGLDYPARRITQNLAPADLPKDGGR
YDLAIALGILAANGQVPVAPLSEIECIGELALSGGLRPVQGVLPAALAAREAGRALVVPRENAEEASLANGLVVYAVGHL
LELVAHLNGQSPLSPFAANGLLLRERPYPDLSEVQGQTAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHKPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRIRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHQTVARESTVLTHQPCG
ESSASVARLVAEARELQQRRQGCANAFLDLNGLRRHCALEAVDQAWLENACERLTLSLRAAHRLLKVARTLADLEQRECI
GRAHLAEALQYRPST

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=76439 H7R82_RS24280 WP_102081142.1 5267936..5269423(+) (comM) [Pseudomonas putida strain WP4-W18-CRE-03]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGCTGGCGCCTGCTGTCAGTGTCGAAACCCATCTGGCCAA
CGGCCTGCCCACCCTGACCCTGGTCGGTCTGCCCGAAGCCACGGTCAAGGAGAGCAAGGACCGCGTGCGCAGCGCCATCG
TCAACTCCGGCCTGGACTACCCCGCCCGACGCATCACCCAGAACCTCGCCCCGGCCGATCTGCCCAAGGACGGCGGGCGT
TACGATCTGGCCATCGCCTTGGGCATCCTGGCCGCCAATGGCCAGGTTCCGGTGGCGCCCCTGAGCGAAATCGAGTGCAT
CGGCGAGCTGGCGCTGTCGGGTGGATTGCGCCCAGTGCAAGGCGTGCTGCCTGCGGCACTGGCCGCGCGAGAGGCTGGGC
GAGCCCTGGTGGTACCCAGGGAGAACGCCGAGGAAGCGAGCCTGGCGAATGGCTTGGTGGTCTACGCGGTGGGCCATCTG
CTCGAGCTGGTGGCCCACCTCAACGGCCAGTCGCCCCTATCACCCTTTGCAGCCAACGGCCTGCTGCTGCGGGAGCGGCC
CTACCCGGACCTCAGCGAGGTCCAGGGCCAGACTGCCGCCAAGCGTGCGCTGCTGGTGGCTGCGGCCGGTGCACACAATC
TGCTTTTCACCGGACCGCCCGGCACGGGCAAGACCCTACTCGCCAGCCGCCTGCCCGGGTTGCTCCCGCCGCTGGATGAG
CACGAGGCTCTGGAAGTGGCGGCAATCCAATCGGTCAGCGGTCATAAGCCGCTGGACTGCTGGCCCCAGCGCCCCTTCCG
TCATCCTCATCACTCGGCGTCAGGCCCGGCCCTGGTGGGCGGTGGCAGTCGACCTCAACCGGGCGAGATCACCCTGGCGC
ATCATGGCGTGTTGTTTCTGGACGAACTGCCGGAGTTCGAGCGACGCGTGCTCGAAGTGCTCCGCGAGCCGCTGGAGTCA
GGGGAAATCGTAGTGGCCCGTGCCAAGGATCGCATACGCTTTCCTGCACGCTTTCAGCTGGTAGCGGCCATGAACCCCTG
CCCTTGCGGTTACCTGGGTGATCCCACCGGGCGTTGCCGGTGCAGCACCGAGCAAATCCAGCGTTATCGCAACAAGCTGT
CCGGCCCGCTGCTCGACCGGATCGATCTGCACCAGACCGTGGCCAGGGAAAGCACCGTACTGACCCACCAGCCTTGCGGC
GAGTCCAGCGCCAGCGTCGCCCGCCTGGTGGCCGAGGCACGTGAGTTACAGCAGCGGCGCCAGGGCTGCGCCAATGCCTT
TCTCGACCTCAACGGCCTGCGCCGCCACTGTGCGCTGGAAGCGGTCGACCAGGCCTGGTTGGAAAATGCCTGCGAGCGCC
TGACTTTGTCCCTGCGGGCGGCCCACCGCCTGCTCAAGGTAGCCCGTACTTTGGCAGACCTTGAACAGAGAGAATGCATT
GGGCGTGCGCACTTGGCCGAAGCGCTCCAGTATCGACCAAGCACCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.691

100

0.554
  comM Vibrio cholerae strain A1552

54.545

100

0.545
  comM Vibrio campbellii strain DS40M4

54.545

100

0.545
  comM Glaesserella parasuis strain SC1401

53.267

100

0.543
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.207

100

0.489
  comM Legionella pneumophila str. Paris

48.79

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.79

100

0.489

Multiple sequence alignment