Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   O0V01_RS00085 Genome accession   NZ_CP114031
Coordinates   17427..17933 (-) Length   168 a.a.
NCBI ID   WP_087442693.1    Uniprot ID   -
Organism   Paenibacillus thiaminolyticus strain PATH554     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 12427..22933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0V01_RS00065 (O0V01_00065) - 13936..14862 (-) 927 WP_284655983.1 DUF2232 domain-containing protein -
  O0V01_RS00070 (O0V01_00070) - 14991..15413 (-) 423 WP_119793797.1 CBS domain-containing protein -
  O0V01_RS00075 (O0V01_00075) - 15532..16509 (-) 978 WP_272047508.1 LCP family protein -
  O0V01_RS00080 (O0V01_00080) rpsR 17131..17406 (-) 276 WP_087442694.1 30S ribosomal protein S18 -
  O0V01_RS00085 (O0V01_00085) ssbA 17427..17933 (-) 507 WP_087442693.1 single-stranded DNA-binding protein Machinery gene
  O0V01_RS00090 (O0V01_00090) rpsF 17981..18268 (-) 288 WP_006678724.1 30S ribosomal protein S6 -
  O0V01_RS00095 (O0V01_00095) - 18548..18742 (+) 195 WP_006678725.1 YjzC family protein -
  O0V01_RS00105 (O0V01_00105) - 19681..19884 (-) 204 WP_087442692.1 DUF951 domain-containing protein -
  O0V01_RS00110 (O0V01_00110) - 19874..20803 (-) 930 WP_284655984.1 mechanosensitive ion channel domain-containing protein -
  O0V01_RS00115 (O0V01_00115) - 20808..21083 (-) 276 WP_087442690.1 DUF3343 domain-containing protein -
  O0V01_RS00120 (O0V01_00120) yyaC 21190..21777 (+) 588 WP_284655985.1 spore protease YyaC -
  O0V01_RS00125 (O0V01_00125) - 21774..22235 (-) 462 WP_338139495.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18469.25 Da        Isoelectric Point: 4.8107

>NTDB_id=764054 O0V01_RS00085 WP_087442693.1 17427..17933(-) (ssbA) [Paenibacillus thiaminolyticus strain PATH554]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFSNQSGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYDNNEGKRVYVTEVIADNVRFLESNRDSGGSRDDMGGGYGGGQPNNNSRPYGGGGSNQPQSQSRGPAADPFSDDGRPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=764054 O0V01_RS00085 WP_087442693.1 17427..17933(-) (ssbA) [Paenibacillus thiaminolyticus strain PATH554]
ATGTTGAATCGCGTGATCTTGATTGGTCGTCTAACCCGTGACCCTGAATTGCGCTATACGCCATCCGGAGTTGCTGTGAC
GCAATTTACGTTGGCGGTCGATCGTCCGTTCTCGAACCAGAGCGGCGAGCGGGAGGCGGATTTCATTCCCGTGGTTACAT
GGCGGCAGTTGGCAGAGACTTGCGCCAATTACTTGCGTAAAGGTCGGCTGACGGCAGTGGAAGGACGAATCCAAGTCCGC
AATTACGACAACAATGAAGGGAAGCGCGTATACGTTACGGAGGTTATCGCCGATAACGTACGATTCCTGGAGTCCAACCG
CGACAGCGGAGGAAGTCGTGATGATATGGGCGGAGGTTATGGCGGCGGACAGCCGAACAATAACTCGCGGCCATATGGCG
GAGGAGGCTCTAACCAGCCCCAGTCCCAGTCCCGCGGTCCGGCAGCGGATCCATTCTCTGACGACGGCAGACCGATCGAT
ATATCTGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.571
  ssb Latilactobacillus sakei subsp. sakei 23K

51.429

100

0.536
  ssb Neisseria gonorrhoeae MS11

36.571

100

0.381
  ssb Glaesserella parasuis strain SC1401

33.871

100

0.375
  ssb Neisseria meningitidis MC58

36

100

0.375