Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   OIY87_RS10515 Genome accession   NZ_CP113954
Coordinates   2093877..2096024 (+) Length   715 a.a.
NCBI ID   WP_269724980.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2088877..2101024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS10480 (OIY87_11795) - 2089939..2090238 (-) 300 WP_013643490.1 DUF3884 family protein -
  OIY87_RS10485 (OIY87_11800) - 2090264..2090446 (-) 183 WP_013643491.1 hypothetical protein -
  OIY87_RS10490 (OIY87_11805) - 2090528..2090737 (-) 210 WP_013643492.1 helix-turn-helix domain-containing protein -
  OIY87_RS10495 (OIY87_11810) - 2090727..2091740 (-) 1014 WP_269724979.1 bacteriocin biosynthesis protein -
  OIY87_RS10500 (OIY87_11815) - 2092799..2092996 (-) 198 WP_009855009.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  OIY87_RS10505 (OIY87_11820) - 2093015..2093266 (-) 252 WP_009855010.1 bacteriocin class II family protein -
  OIY87_RS10510 (OIY87_11825) - 2093513..2093770 (+) 258 WP_009855011.1 hypothetical protein -
  OIY87_RS10515 (OIY87_11830) comA/nlmT 2093877..2096024 (+) 2148 WP_269724980.1 peptide cleavage/export ABC transporter Regulator
  OIY87_RS10520 (OIY87_11835) - 2096036..2097430 (+) 1395 WP_269724981.1 bacteriocin secretion accessory protein -
  OIY87_RS10525 (OIY87_11840) - 2097622..2098296 (+) 675 WP_269724982.1 CPBP family intramembrane glutamic endopeptidase -
  OIY87_RS10530 (OIY87_11845) - 2098314..2098484 (+) 171 WP_157769870.1 hypothetical protein -
  OIY87_RS10535 (OIY87_11850) - 2098502..2098663 (+) 162 WP_269724983.1 hypothetical protein -
  OIY87_RS10540 (OIY87_11855) - 2098705..2099160 (+) 456 WP_269724984.1 CPBP family intramembrane glutamic endopeptidase -
  OIY87_RS10545 (OIY87_11860) rsmA 2099194..2100066 (-) 873 WP_009855016.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  OIY87_RS10550 (OIY87_11865) - 2100137..2100661 (-) 525 WP_077497742.1 DUF1697 domain-containing protein -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 79993.75 Da        Isoelectric Point: 7.0646

>NTDB_id=763847 OIY87_RS10515 WP_269724980.1 2093877..2096024(+) (comA/nlmT) [Streptococcus gallolyticus strain XH2168]
MRRYKYVSQIDLRDYGVAALASVAKHYGSDFSLAHLRELAKTTKEGTTALGIVEAAKAIGFETRAIQANMELFDMADIPY
PFIVHVNKEGKLPHYYVIYKAKKDYLIIGDPDSSVGVTKMSKAHFAKEWTGVAIFLAPAPHYQPHKDKKNGLTSFLPIIF
KQKALLTYIILASLLVTLINIVGSYYLQGILDDYIPNHLQSTLGIVSVGLIVTYIMQQIMSFSQNYLLVVLSQRLTIDVI
LSYIRHIFELPMSFFATRRTGEVISRFTDANSIIDALASTILSLFLDVSILFIVGSVLILQNANLFFITLIALPIYAIII
LAFMKPFERMNHDVMQANSMVSSAIIEDINGIETIKSLTSEEVRYQNIDREFVDYLDKSFTLSKYEAVQTSLKQGAQLIL
NVVILWYGSHLVMAGNISVGQLITYNTLLSYFTTPMENIINLQTKLQSAKVANNRLNEVYLVSSEFDGKQLLNDSHFLQG
DIVFDNVSYKYGFGRDTLSHVNLHIKKGEKISLVGISGSGKTTLAKMIVNFYTPNHGQITLGGYDLKTIDKKAIRQYINY
LPQQSYVFSGTILENLTLGAPDNITQEEILKACEIAEIRADIELMPLAYHTELSDGAGLSGGQKQRLALARTLLTQAPVL
ILDEATSGLDVLTEKRVIKNLLSLTDKTIIFVAHRLSIAEQSDRVIVLDKGQVIEEGHHKQLIQNQGFYAQLFHE

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=763847 OIY87_RS10515 WP_269724980.1 2093877..2096024(+) (comA/nlmT) [Streptococcus gallolyticus strain XH2168]
ATGAGAAGATATAAATATGTTAGTCAGATTGATTTGCGAGACTATGGTGTGGCAGCTTTGGCATCAGTTGCCAAGCATTA
TGGATCAGATTTCTCGCTGGCTCATTTGAGAGAATTAGCCAAAACAACTAAGGAAGGGACAACAGCATTAGGGATAGTTG
AGGCAGCTAAAGCAATCGGCTTTGAAACACGCGCCATTCAGGCTAATATGGAACTGTTTGATATGGCTGATATTCCCTAT
CCTTTTATTGTTCATGTTAACAAAGAAGGCAAACTCCCGCATTACTATGTTATCTACAAAGCCAAAAAAGATTATCTTAT
TATCGGTGACCCTGATTCGAGCGTTGGGGTCACTAAAATGTCCAAAGCGCATTTTGCCAAAGAGTGGACTGGGGTTGCTA
TCTTTTTAGCGCCTGCTCCGCATTATCAACCACATAAAGATAAGAAAAATGGCTTAACAAGCTTTTTACCAATTATTTTC
AAACAAAAGGCACTGCTAACTTATATCATTCTGGCAAGTTTGCTCGTGACCTTGATTAATATTGTTGGGTCTTACTATTT
GCAAGGAATCTTAGACGATTATATTCCTAATCATTTGCAATCCACTCTTGGCATTGTCTCGGTTGGGTTGATTGTAACCT
ACATAATGCAACAAATCATGAGCTTTTCACAAAATTATTTACTTGTTGTGCTGAGCCAACGGTTAACAATTGACGTGATT
TTGTCTTATATTCGTCATATTTTTGAATTGCCCATGTCCTTTTTTGCCACAAGGCGGACAGGTGAAGTTATCTCACGTTT
CACCGATGCTAACTCGATTATTGATGCACTGGCATCAACGATTCTCTCTTTATTTTTAGATGTGAGTATTTTGTTTATTG
TCGGAAGTGTCTTAATTCTGCAAAATGCCAATCTTTTTTTCATCACCTTAATAGCATTGCCTATCTATGCTATTATTATT
TTGGCTTTTATGAAGCCTTTTGAGCGAATGAATCACGATGTCATGCAAGCCAATTCTATGGTTAGCTCTGCGATTATCGA
AGATATCAATGGTATTGAAACGATTAAATCTTTGACTAGCGAGGAAGTCCGTTATCAAAATATTGACCGTGAATTTGTGG
ATTATTTGGATAAAAGTTTTACGCTTAGTAAGTATGAAGCTGTGCAAACGTCGTTAAAACAGGGAGCACAGCTGATTTTA
AACGTCGTCATTCTCTGGTATGGTTCACATTTAGTCATGGCTGGGAACATTTCAGTAGGTCAATTGATTACTTACAATAC
GCTTCTGTCGTACTTTACAACACCAATGGAAAATATTATTAATCTGCAAACCAAACTACAATCTGCCAAAGTAGCTAACA
ATCGTCTCAACGAAGTTTACTTAGTGTCATCTGAATTTGATGGCAAACAACTCTTAAATGACAGCCATTTTCTACAAGGA
GATATTGTTTTTGATAATGTTTCTTATAAATATGGTTTTGGTCGTGACACACTGAGTCATGTGAATTTACACATTAAGAA
GGGTGAAAAAATTAGCCTAGTTGGTATCAGCGGTTCTGGTAAGACAACCTTAGCTAAAATGATTGTCAATTTTTACACAC
CTAACCATGGACAGATTACCCTTGGTGGCTACGATTTAAAAACCATTGATAAAAAAGCCATTCGCCAATACATTAATTAC
CTACCACAACAGTCTTACGTCTTTTCAGGGACGATTTTAGAAAATTTAACCTTGGGAGCACCTGACAATATCACGCAAGA
AGAAATTCTGAAAGCTTGTGAAATCGCTGAAATCCGTGCTGATATTGAATTGATGCCACTAGCATACCATACTGAACTTT
CAGATGGTGCTGGGTTATCTGGTGGGCAAAAGCAACGTTTAGCTTTAGCACGCACTTTACTGACACAAGCTCCCGTCTTG
ATTTTAGATGAAGCCACAAGTGGTCTTGATGTTCTAACGGAAAAACGTGTGATTAAAAATTTACTATCTCTCACAGACAA
GACTATTATTTTTGTTGCCCACCGTTTGAGCATTGCTGAACAATCTGACCGTGTCATTGTTCTAGATAAAGGACAAGTTA
TCGAAGAAGGGCATCATAAACAACTCATCCAAAATCAAGGTTTCTATGCACAGTTATTTCATGAATAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(3-140)

ABC transporter transmembrane region (ABC_membrane)

(166-436)

ABC transporter (ABC_tran)

(498-647)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

69.986

99.72

0.698
  comA Streptococcus mitis NCTC 12261

66.62

99.301

0.662
  comA Streptococcus pneumoniae D39

66.102

99.021

0.655
  comA Streptococcus pneumoniae Rx1

66.102

99.021

0.655
  comA Streptococcus pneumoniae R6

66.102

99.021

0.655
  comA Streptococcus mitis SK321

65.915

99.301

0.655
  comA Streptococcus gordonii str. Challis substr. CH1

65.498

99.72

0.653
  comA Streptococcus pneumoniae TIGR4

65.819

99.021

0.652