Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   OIY87_RS02680 Genome accession   NZ_CP113954
Coordinates   488674..489336 (+) Length   220 a.a.
NCBI ID   WP_012961543.1    Uniprot ID   A0A139QVH3
Organism   Streptococcus gallolyticus strain XH2168     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483674..494336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS02655 (OIY87_03950) - 483790..485190 (+) 1401 WP_009853572.1 Cof-type HAD-IIB family hydrolase -
  OIY87_RS02660 (OIY87_03955) - 485190..485546 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  OIY87_RS02665 (OIY87_03960) cysK 485660..486589 (-) 930 WP_269725166.1 cysteine synthase A -
  OIY87_RS02670 (OIY87_03965) - 486693..487319 (-) 627 WP_048791291.1 YigZ family protein -
  OIY87_RS02675 (OIY87_03970) comFA/cflA 487376..488677 (+) 1302 WP_234756262.1 DEAD/DEAH box helicase Machinery gene
  OIY87_RS02680 (OIY87_03975) comFC/cflB 488674..489336 (+) 663 WP_012961543.1 ComF family protein Machinery gene
  OIY87_RS02685 (OIY87_03980) hpf 489412..489960 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25606.64 Da        Isoelectric Point: 9.1814

>NTDB_id=763817 OIY87_RS02680 WP_012961543.1 488674..489336(+) (comFC/cflB) [Streptococcus gallolyticus strain XH2168]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVHCPNCCRNGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKELKQALKKYKNYTFVPVPISPKRLKERQFNQVTALLQAAKISYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYENGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=763817 OIY87_RS02680 WP_012961543.1 488674..489336(+) (comFC/cflB) [Streptococcus gallolyticus strain XH2168]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTCATCTTAATGAAGAAAGATGACAA
CGGCGTTTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTCATTGCCCTAACTGCTGCCGAAATGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCATGGGAAAAACAACATCATCACGTCTCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATCCTTTTAAGTCACGTTTTTTCAAAAGAACTCAAACA
AGCATTAAAAAAATATAAAAATTATACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCGCTTTTACAAGCAGCTAAAATCTCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATTGATGATATTTACACAACTGGCGCCACTTTAAAAGGAATATATCAACTTTTCTATGAAAATGGCGCAAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139QVH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

51.818

100

0.518
  comFC/cflB Streptococcus pneumoniae TIGR4

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae Rx1

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae D39

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae R6

51.364

100

0.514
  comFC/cflB Streptococcus mitis SK321

50.909

100

0.509