Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   OIY87_RS02675 Genome accession   NZ_CP113954
Coordinates   487376..488677 (+) Length   433 a.a.
NCBI ID   WP_234756262.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482376..493677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS02650 (OIY87_03945) - 483027..483671 (+) 645 WP_009853571.1 response regulator transcription factor -
  OIY87_RS02655 (OIY87_03950) - 483790..485190 (+) 1401 WP_009853572.1 Cof-type HAD-IIB family hydrolase -
  OIY87_RS02660 (OIY87_03955) - 485190..485546 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  OIY87_RS02665 (OIY87_03960) cysK 485660..486589 (-) 930 WP_269725166.1 cysteine synthase A -
  OIY87_RS02670 (OIY87_03965) - 486693..487319 (-) 627 WP_048791291.1 YigZ family protein -
  OIY87_RS02675 (OIY87_03970) comFA/cflA 487376..488677 (+) 1302 WP_234756262.1 DEAD/DEAH box helicase Machinery gene
  OIY87_RS02680 (OIY87_03975) comFC/cflB 488674..489336 (+) 663 WP_012961543.1 ComF family protein Machinery gene
  OIY87_RS02685 (OIY87_03980) hpf 489412..489960 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49116.29 Da        Isoelectric Point: 9.8915

>NTDB_id=763816 OIY87_RS02675 WP_234756262.1 487376..488677(+) (comFA/cflA) [Streptococcus gallolyticus strain XH2168]
MDKLDNYYGRLFTQAQLSDALKKQAKQLPAMTKLNHHYVCNRCGSQVSLQNKLQTNVFYCRNCLVFGRNTSNGHLYYFPQ
KRFSKKDSLIWKGKLTPYQDDVSKGMLEGIDAKKDLLIHAVTGAGKTEMIYQSVSKIIDDGGCVCLASPRIDVCLELYKR
LSRDFSCPITLLHGDSEPYKRAPLIIATTHQLLKFYQAFDLLIIDEVDAFPFVDNAVLYHAVDKAIKPNGTKIFLTATST
DELDKKVKTGTLTKLHLARRFHANPLVVPQKIWLSGVLSNMQKKKIPQKLINLLKKQRQTCYPLLIFFPNIEQGEAFTQI
LQTYFPEEQIAFVSSKTENRLEIVEKFRKQELSILVTTTILERGVTFPCVDVFVVLANHRLYTKSALVQISGRVGRAAER
PTGELLFLHDGSTKEMRKAIAEIKAMNKKGGFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=763816 OIY87_RS02675 WP_234756262.1 487376..488677(+) (comFA/cflA) [Streptococcus gallolyticus strain XH2168]
ATGGATAAACTGGATAATTATTATGGAAGACTATTTACACAAGCTCAACTTTCGGATGCCTTAAAAAAGCAGGCTAAACA
GTTGCCAGCAATGACAAAATTAAATCATCATTATGTTTGCAATCGTTGTGGTAGTCAAGTGTCTTTACAAAATAAACTTC
AAACAAACGTTTTTTATTGTCGAAATTGCCTTGTTTTTGGAAGAAATACGAGTAATGGACATCTCTATTATTTTCCACAA
AAACGTTTTTCTAAAAAAGATTCTCTTATTTGGAAAGGAAAATTGACTCCTTACCAAGATGACGTTTCAAAAGGGATGTT
AGAAGGCATTGATGCTAAGAAAGACCTACTTATTCATGCTGTTACAGGTGCTGGAAAAACAGAAATGATTTACCAATCTG
TATCCAAAATAATTGATGACGGTGGTTGTGTTTGCCTGGCAAGTCCGCGAATTGATGTTTGTCTGGAGCTTTATAAACGC
TTGTCACGTGATTTTTCGTGTCCGATTACATTGCTTCATGGAGATTCTGAGCCCTACAAACGTGCCCCTTTAATCATTGC
CACAACACATCAACTTTTAAAATTTTACCAAGCTTTTGATTTGTTAATTATTGATGAAGTTGATGCCTTTCCATTTGTGG
ATAATGCTGTGCTTTACCATGCTGTTGATAAAGCTATCAAACCTAATGGAACCAAGATTTTTTTAACAGCGACATCAACA
GATGAATTAGATAAAAAAGTAAAAACAGGAACTCTGACCAAATTGCACCTTGCTCGACGCTTTCATGCCAATCCATTAGT
TGTGCCACAAAAAATCTGGTTGTCTGGCGTTTTATCCAATATGCAAAAGAAGAAAATTCCCCAGAAATTAATAAATCTTC
TAAAAAAACAACGTCAAACCTGCTATCCTTTGCTAATTTTCTTCCCAAATATCGAACAAGGAGAAGCCTTTACTCAAATT
TTACAAACTTACTTTCCAGAAGAACAAATCGCTTTTGTGTCTAGTAAAACAGAAAATCGCTTAGAAATTGTAGAAAAATT
TAGGAAACAAGAACTTTCTATTTTGGTAACAACAACCATTTTAGAACGTGGTGTCACTTTCCCATGCGTAGATGTTTTTG
TAGTGCTTGCCAATCATAGATTATACACCAAAAGCGCGCTAGTTCAGATTTCAGGGCGAGTTGGGAGAGCAGCAGAGCGT
CCAACAGGAGAACTGTTATTCTTGCATGACGGTAGCACTAAAGAAATGAGAAAAGCTATTGCTGAAATTAAAGCGATGAA
TAAAAAAGGAGGATTTGCATGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(96-244)

Helicase conserved C-terminal domain (Helicase_C)

(287-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

60.422

98.614

0.596
  comFA/cflA Streptococcus pneumoniae Rx1

60.422

98.614

0.596
  comFA/cflA Streptococcus pneumoniae D39

60.422

98.614

0.596
  comFA/cflA Streptococcus pneumoniae R6

60.422

98.614

0.596
  comFA/cflA Streptococcus mitis NCTC 12261

60.187

98.614

0.594
  comFA/cflA Streptococcus mitis SK321

59.485

98.614

0.587
  comFA Lactococcus lactis subsp. cremoris KW2

50.98

94.226

0.48
  comFA Latilactobacillus sakei subsp. sakei 23K

38.391

100

0.386