Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R62_RS00985 Genome accession   NZ_AP022038
Coordinates   195352..196866 (-) Length   504 a.a.
NCBI ID   WP_111807248.1    Uniprot ID   A0A6S5CX50
Organism   Aeromonas veronii strain WP3-W19-ESBL-03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 190352..201866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R62_RS00960 (WP3W19E03_01790) - 191559..192194 (-) 636 WP_042062463.1 nicotinamidase -
  H7R62_RS00965 (WP3W19E03_01800) - 192269..192919 (+) 651 WP_111807240.1 NUDIX hydrolase -
  H7R62_RS00970 (WP3W19E03_01810) - 192916..193428 (+) 513 WP_182938658.1 DUF523 domain-containing protein -
  H7R62_RS00975 (WP3W19E03_01820) - 193344..194318 (-) 975 WP_182938659.1 acyltransferase -
  H7R62_RS00980 (WP3W19E03_01830) - 194325..195224 (-) 900 WP_139409837.1 acyltransferase -
  H7R62_RS00985 (WP3W19E03_01840) comM 195352..196866 (-) 1515 WP_111807248.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R62_RS00990 (WP3W19E03_01850) ilvG 197251..198897 (+) 1647 WP_182938660.1 acetolactate synthase 2 catalytic subunit -
  H7R62_RS00995 (WP3W19E03_01860) ilvM 198894..199172 (+) 279 WP_005339613.1 acetolactate synthase 2 small subunit -
  H7R62_RS01000 (WP3W19E03_01870) - 199185..200129 (+) 945 WP_182938661.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54596.50 Da        Isoelectric Point: 7.6884

>NTDB_id=76347 H7R62_RS00985 WP_111807248.1 195352..196866(-) (comM) [Aeromonas veronii strain WP3-W19-ESBL-03]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLNHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=76347 H7R62_RS00985 WP_111807248.1 195352..196866(-) (comM) [Aeromonas veronii strain WP3-W19-ESBL-03]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCGCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTACGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGCGGTCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAAATACCGGCAAAATACCTGCTCAATCACGAATTTTT
AGGGGAGTTGGCTCTGACTGGCGAGATCCGTCCCGTGCTCGGCGTGCTGCCTGCCGTGCTCGCCTGCCGCGATGCAGGAC
GCACCCTGCTGGTGCCGCGAGAGAACGGCCCTGAGGCCTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGCTGCCACTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCTCTGGAGATCGCCGCCGCTGGCAGCCACAACCTGT
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCCTGCCCGGCATCTTGCCACCGCTGAGTGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGGGCCGGTCACTGGCACCACAGGCCCTATCG
CACGCCGCACCACAGTGCCTCTGCGGTGGCGCTGGTGGGAGGTGGCAGCCATCCGCGGCCCGGCGAAATTTCGCTAGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCGGAGTTCGAGCGCAAGGTACTCGACTCTCTGCGCGAACCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCTGCCCGTCAGGTGGACTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCTTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGTTACCTCGGCAAGCTCTCCGGCC
CTTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAACGAGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGGATGCTCAGCCGCAATGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGACTATCAGCGCAAGATGCCGAGTTTTTGGAGAACGCCATCCAGAAGC
TGGGACTCAGTATCCGGGCCTGGCACCGCATTTTGCGGGTGTCGCGCACCATCGCCGATCTGGCGGGACAACCGGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGATCGTCTGCTGTCGCGGCTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S5CX50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

51.19

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466

Multiple sequence alignment