Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OX886_RS21505 Genome accession   NZ_CP113902
Coordinates   4482484..4483014 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain AD-W2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4477484..4488014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX886_RS21465 (OX886_00375) - 4477750..4478157 (-) 408 WP_016930256.1 VOC family protein -
  OX886_RS21470 (OX886_00370) - 4478205..4478873 (-) 669 WP_016930257.1 glutathione S-transferase -
  OX886_RS21475 (OX886_00365) - 4478870..4479313 (-) 444 WP_033639278.1 lipocalin-like domain-containing protein -
  OX886_RS21480 (OX886_00360) - 4479509..4479769 (+) 261 WP_033639277.1 YdgH/BhsA/McbA-like domain containing protein -
  OX886_RS21485 (OX886_00355) - 4479919..4480668 (+) 750 WP_016930260.1 3-oxoacyl-ACP reductase family protein -
  OX886_RS21490 (OX886_24640) - 4480717..4481193 (-) 477 WP_097101321.1 Rrf2 family transcriptional regulator -
  OX886_RS21495 (OX886_24645) - 4481351..4481731 (+) 381 WP_097101318.1 DUF1360 domain-containing protein -
  OX886_RS21500 (OX886_24650) - 4481743..4482453 (+) 711 WP_097101317.1 class I SAM-dependent methyltransferase -
  OX886_RS21505 (OX886_00340) ssb 4482484..4483014 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OX886_RS21510 (OX886_00335) uvrA 4483292..4486120 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  OX886_RS21515 (OX886_00330) - 4486350..4487402 (+) 1053 WP_016930261.1 NAD(P)-dependent alcohol dehydrogenase -
  OX886_RS21520 (OX886_00325) maa 4487434..4487991 (-) 558 WP_016930262.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=763448 OX886_RS21505 WP_004936793.1 4482484..4483014(-) (ssb) [Serratia marcescens strain AD-W2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=763448 OX886_RS21505 WP_004936793.1 4482484..4483014(-) (ssb) [Serratia marcescens strain AD-W2]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364