Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OYT13_RS02750 Genome accession   NZ_CP113827
Coordinates   605405..605926 (+) Length   173 a.a.
NCBI ID   WP_017232617.1    Uniprot ID   A0AAW7MT86
Organism   Pandoraea sp. XJJ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 606164..607030 605405..605926 flank 238


Gene organization within MGE regions


Location: 605405..607030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT13_RS02750 (OYT13_02750) ssb 605405..605926 (+) 522 WP_017232617.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17998.70 Da        Isoelectric Point: 5.3258

>NTDB_id=763185 OYT13_RS02750 WP_017232617.1 605405..605926(+) (ssb) [Pandoraea sp. XJJ-1]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKELTEWHRVSFFGRLAEIVNEYLKKGSAVYIEG
RIRTRKYQAQDGTERYSTEIVADQMQMLGGRSGGEGGGGGGGYSRGGGGSDEGGGGGYSRGGGGGGGGGGARQQAPAKQS
GGGFDDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=763185 OYT13_RS02750 WP_017232617.1 605405..605926(+) (ssb) [Pandoraea sp. XJJ-1]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGCAACCTTGGCGCCGATCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAGTCTGGCGAGTTCAAGGAGCTGACGGAATGGC
ACCGGGTGTCGTTCTTCGGCCGTCTCGCCGAGATCGTCAATGAGTACCTGAAGAAGGGCTCGGCGGTGTATATCGAAGGT
CGTATCCGCACGCGCAAGTACCAGGCGCAGGACGGCACCGAGCGTTACAGCACGGAAATCGTAGCGGACCAGATGCAGAT
GCTGGGCGGCCGCAGCGGTGGTGAAGGTGGCGGCGGCGGTGGCGGCTACTCGCGCGGCGGTGGTGGTAGCGACGAAGGCG
GCGGTGGCGGTTATTCGCGCGGCGGTGGTGGCGGTGGTGGTGGTGGCGGTGCCCGTCAGCAAGCACCGGCCAAGCAGTCG
GGCGGCGGTTTTGACGACATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.735

100

0.543
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.503
  ssb Neisseria meningitidis MC58

45.198

100

0.462
  ssb Neisseria gonorrhoeae MS11

45.198

100

0.462
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.405